View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_5 (Length: 573)
Name: NF3998_high_5
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 40610462 - 40610783
Alignment:
| Q |
9 |
agcagagatcaaacaaatttggttcagcaaaactcaaacaaacaaaaggggtagctattaacagagaaagagaagaattggcaactatt-aacttggtgc |
107 |
Q |
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| T |
40610462 |
agcatagatcaaacaaatttggttcagcaaaactcaaacaaacaaaaggggtagctattaacagagaaagagaagaattggcaactatttaacttggtgc |
40610561 |
T |
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| Q |
108 |
taacaacnnnnnnnnnggatcaaactttatgaacttgtaatcttgttcaataccttaaaattttctttatttgttnnnnnnnn-caaacttgtactattg |
206 |
Q |
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| T |
40610562 |
tgacaacaaaaaaa--ggatcaaactttatgaacttgtaatcttgtttaataccttaaaagtttctttctttgttaaaaaaaaacaaacttgtactatt- |
40610658 |
T |
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| Q |
207 |
agtcnnnnnnngtaaagtttgattaagaaaaagattagaaactttgccaaaatagtccaaccaaaatattgaaggaatatatattaaagggtagtgggaa |
306 |
Q |
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| T |
40610659 |
agtcaaaaaa-gtaaagtttgattaagaaaaagattagaaactttgccaaaatagtccaaccaaactattgaaggaatatatattaaagggtagtgggaa |
40610757 |
T |
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| Q |
307 |
atacaataattgcacataccttattg |
332 |
Q |
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| T |
40610758 |
atccaataattgcacataccttattg |
40610783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 421 - 555
Target Start/End: Original strand, 40610886 - 40611020
Alignment:
| Q |
421 |
gcataaagtttggtcaccttcatatgtcatccaaccaacccagtagagcacatctgagaatgaatgaattggattcagttctattgttccaaccagacag |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40610886 |
gcataaagtttggtcaccttcatatgtcatccaaccaacacagtagagcacatctgagaatgaatgaattggattcagttctattgttacaaccagacag |
40610985 |
T |
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| Q |
521 |
aagtacaatgatgtttttgtggaatatggatttat |
555 |
Q |
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| T |
40610986 |
aagtacaatgatgtttttgtggaatatggatttat |
40611020 |
T |
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