View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_high_7 (Length: 524)
Name: NF3998_high_7
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Original strand, 29532253 - 29532749
Alignment:
| Q |
11 |
cacagacacccaaagagagagaagaaacaatata--aatatatagtcttttgtgtcaaaaattcagtttgagaagcacttattatctttattttatgagt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29532253 |
cacaaacacccaaagagagagaagaaacaatatataaatatatagtcttttgtgtcaaaaattcagtttgagaagcacttactatctttattttatgagt |
29532352 |
T |
|
| Q |
109 |
gggtaaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccatccaattag |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532353 |
gg-taaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccatccaattag |
29532451 |
T |
|
| Q |
209 |
cataagggctccacacagaagagatcttagatttcttgaagaattttggaagattgatatttgatgttgcatagaggtagcggcttatggtgtatccatc |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532452 |
cataagggctccaaacagaagagatcttagatttcttgaagaattttggaagattgatatttgatgttgcatagaggtagcggcttatggtgtatccatc |
29532551 |
T |
|
| Q |
309 |
tcccatgtaaagtttctcaaagaaatgtgcaggatgatacttgcatgttccacaatattttgagttttgatcgaagtcgaatgaatcgtaacatgcttga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532552 |
tcccatgtaaagtttctcaaagaaatgtgcaggatgatacttgcatgttccacaatattttgagttttgatcgaagtcgaatgaatcgtaacatgcttga |
29532651 |
T |
|
| Q |
409 |
gctagctcaccatagcgaatgatttctttgcgtaggataggatccattggatctaatagaccttcccagtcgttctcgccttggatttctctccatac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532652 |
gctagctcaccatagcgaatgatttctttgcgtaggataggatccattggatctaatagaccttcccagtcgttctcgccttggatttctctccatac |
29532749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University