View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_9 (Length: 499)
Name: NF3998_high_9
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_9 |
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| [»] scaffold0445 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 158 - 483
Target Start/End: Original strand, 46853979 - 46854307
Alignment:
| Q |
158 |
ttaatccggtcaaacccttggttataatattatttcttaaattcttnnnnnnnnnnn--tgttcgaataaatatatacatatatttaaagaaagctccta |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
46853979 |
ttaatccggtcaaacccttggttataatattatttcttaaattcttcaaaaaaaaaagatgttcgaataaatatatacatatatttaaaggaagccccta |
46854078 |
T |
|
| Q |
256 |
atatggtctttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaatnnnnnnnntacannnnnnnggtcccacacaaaa |
355 |
Q |
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| T |
46854079 |
atatggtccttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaataaaaaa--tacattttcttggtcccacacaaaa |
46854176 |
T |
|
| Q |
356 |
-aacatcattttttaattgcaacaattgatattacttttgtgcccttcttttaacaacaaaaaaccataagtgcaaaaccatttctctcctctttttctc |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
46854177 |
aaacatcattttttaattgcaacaattgatattacttttgtgcccttcttttaacaacaaaaaatcataagtgcaaaaccatttctctcctc-ttttctc |
46854275 |
T |
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| Q |
455 |
tttcttcatcgt---ttttcactcttaattct |
483 |
Q |
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|||||||||||| ||||||||||||||||| |
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| T |
46854276 |
tttcttcatcgtcagttttcactcttaattct |
46854307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 247 - 442
Target Start/End: Complemental strand, 47749612 - 47749418
Alignment:
| Q |
247 |
aagctcctaatatggtctttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaatnnnnnnnntacannnnnnnggtcc |
346 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
47749612 |
aagcccctgatatggtccttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaataaaaaa--taccttttcttggtcc |
47749515 |
T |
|
| Q |
347 |
cacacaaaaaa-catcattttttaattgcaacaattgatattacttttgtgcccttcttttaacaacaaaaaaccataagtgcaaaaccatttctct |
442 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
47749514 |
cacacaaaaaaacatcattttttaactgcaacaattgatattacttttgtgcccttcttttaacaacaagaaaccataagtgcaaaaccttttctct |
47749418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 46853802 - 46853918
Alignment:
| Q |
13 |
aatataagaatataaagaaaatcgacaa-ggtaaattgcatatgtatttcaaaagaaggtnnnnnnnnttttataagttttctttgcctggtcttttttg |
111 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |
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| T |
46853802 |
aatataagaatataaagaaaatcgagaaaggtaaattgcatatgtatttcaaaagaaggt-aaattttttttataagttctctttgactgatcttttttg |
46853900 |
T |
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| Q |
112 |
ccttgaactaaaacatca |
129 |
Q |
| |
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|||||||||||||||||| |
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| T |
46853901 |
ccttgaactaaaacatca |
46853918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 46855006 - 46854934
Alignment:
| Q |
247 |
aagctcctaatatggtctttaatattaggggttca-ccatgatcctctcaaaattaccttcaatagcatgttt |
318 |
Q |
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|||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
46855006 |
aagcccctaatatggtccttaatattagaggttcatccatgatcctctcaaaattacctttaatagcaggttt |
46854934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 47748416 - 47748470
Alignment:
| Q |
265 |
ttaatattaggggttcacc-atgatcctctcaaaattaccttcaatagcatgttt |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
47748416 |
ttaatattaggggttcacccatgatcctctcaaaattacctttaatagcatgttt |
47748470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 31667966 - 31667919
Alignment:
| Q |
259 |
tggtctttaatattaggggttcacc-atgatcctctcaaaattacctt |
305 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31667966 |
tggtccttaatattaggggttcacccatgatcctctcaaaattacctt |
31667919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 46854876 - 46854794
Alignment:
| Q |
377 |
caattgatattacttttgtgcccttct-tttaacaacaaaaaaccataagtgcaaaaccatttctctcctctttttctctttc |
458 |
Q |
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|||||||||||||||||||| ||||| ||||||| |||||| ||| || || | ||| ||||||||||||||| |||||||| |
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| T |
46854876 |
caattgatattacttttgtgtccttccatttaacatcaaaaatccagaaatgtagaacaatttctctcctctttctctctttc |
46854794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 247 - 430
Target Start/End: Original strand, 11579 - 11762
Alignment:
| Q |
247 |
aagctcctaatatggtctttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaatnnnnnnnntacannnnnnnggtcc |
346 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
11579 |
aagcccctaatatggtccttaatattaggggttcaccatgatcctctcaaaattaccttcaatagcatgtttcaataaaaaaa-tacattttcttggtcc |
11677 |
T |
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| Q |
347 |
cacacaaaa-aacatcattttttaattgcaacaattgatattacttttgtgcccttcttttaacaacaaaaaaccataagtgcaa |
430 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11678 |
cacacaaaaaaacatcattttttaactgcaacaattgatattacttttgtgccattcttttaacaacaaaaaaccataagtgcaa |
11762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 12508 - 12441
Alignment:
| Q |
252 |
cctaatatggtctttaatattaggggttcacc-atgatcctctcaaaattaccttcaatagcatgttt |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
12508 |
cctaatatggtccttaatattaggggttcacccatgatcctctcaaaattacctttaatagcaggttt |
12441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 463
Target Start/End: Complemental strand, 417089 - 416996
Alignment:
| Q |
369 |
aattgcaacaattgatattacttttgtgccctt-cttttaacaacaaaaaaccataagtgcaaaaccatttctctcctctttttctctttcttcat |
463 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||| | ||| | ||||||||| |
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| T |
417089 |
aattgcagtaattgatattacttttgtgcccttccttttaacaacaaaaatc--taagtgcaaaaccatcactctcctttctttatttttcttcat |
416996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 7579481 - 7579413
Alignment:
| Q |
252 |
cctaatatggtctttaatattagggg-ttcacc-atgatcctctcaaaattaccttcaatagcatgttt |
318 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
7579481 |
cctaatatggtccttaatattagggggttcacccatgatcctctcaaaattacctttaatagcaggttt |
7579413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32656834 - 32656767
Alignment:
| Q |
252 |
cctaatatggtctttaatattaggggttcacc-atgatcctctcaaaattaccttcaatagcatgttt |
318 |
Q |
| |
|
|||||||||||| || ||||||| |||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
32656834 |
cctaatatggtccttgatattagaggttcacctatggtcctctcaaaattaccttcaatagcaggttt |
32656767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 7579358 - 7579276
Alignment:
| Q |
374 |
caacaattgatattacttttgtgccctt-cttttaacaacaaaaaaccataagtgcaaaaccatttctctcctctttttctct |
455 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||| |||||| ||| || || | ||| ||||||||||||||| ||||| |
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|
| T |
7579358 |
caacaattgatattacttttgtgtccttccatttaacaccaaaaatccagaaatgtagaacaatttctctcctctttctctct |
7579276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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