View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_low_11 (Length: 486)
Name: NF3998_low_11
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 421072 - 420603
Alignment:
| Q |
17 |
aacaatggattggaataccctcaaaatctcaaagttacctcttcaagcaaccaatctcaatgcaacaattactattccctaacaaagaagaaactagata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
421072 |
aacaatggattggaataccctcaaaatctcaaagttacctcttcaagcaaccaatctcaatgcaacaattactattccctaacaaagaagaaactagata |
420973 |
T |
|
| Q |
117 |
gaaatagcttcaatggagaaagagattgtggaaaatctttggaatggtgatagtgaagctcaaattcaagcagcaatgaaacttagtagattgtccaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420972 |
gaaatagcttcaatggagaaagagattgtggaaaatctttggaatggtgatagtgaagctcaaattcaagcagcaatgaaacttagtagattgtccaata |
420873 |
T |
|
| Q |
217 |
agcaaaagcataatttggcagaaggtggagttatggttcctcttgtttccatgcttcattctcaaaactttgaagccatagaagcttctctttgtgcttt |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420872 |
agcaaaagcataatttggcagaaagtggagttatggttcctcttgtttccatgcttcattctcaaaactttgaagccatagaagcttctctttgtgcttt |
420773 |
T |
|
| Q |
317 |
tctcagcctatcctttggcagtgaaaggttagtgcattcaccttctccctaaatattcaacattcaatgtaaaaaactttctccattccttcttagtctt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420772 |
tctcagcctatcctttggcagtgaaaggttagtgcattcactttctccctaaatattcaacattcaatgtaaaaaactttctccattccttcttagtctt |
420673 |
T |
|
| Q |
417 |
atagctatgatcacgaaaattaacgttttttcaagttctgctatgtcatttgttaaccctgtcgaaaacc |
486 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
420672 |
ataactatgatcacgaaaattaacgttttttcaagttctgctatgttatttgttaacactgtcgaaaacc |
420603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University