View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_12 (Length: 478)
Name: NF3998_low_12
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 8899581 - 8899134
Alignment:
| Q |
17 |
agcacggtaatgaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaa |
116 |
Q |
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| T |
8899581 |
agcacggtaatgaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaa |
8899482 |
T |
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| Q |
117 |
agcacgttgtatgtcatatttctgaatcnnnnnnnnnctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgtt |
216 |
Q |
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| T |
8899481 |
agcacgttgtatgtcatatttctggatctttttttt-ctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgtt |
8899383 |
T |
|
| Q |
217 |
ttaatctctgtcgtatgttatttatacagattagcaggcctctccaaaatacaacatccgcacaaagcaaccttaaaattgcgacagaagacaattttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
8899382 |
ttaatctctgtcgtatgttatttatacagattagcaggcctctccaaaatacaacatctgcacaaagtaaccttaaaattgcgacagaagacaattttcc |
8899283 |
T |
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| Q |
317 |
ttgcaaccaatcgactgattctgcttctgtggcttcctcacagaaaaataatgaatgcagtgagaaattgagcaagtctcaagtaagttccacctataaa |
416 |
Q |
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| T |
8899282 |
tcgcagccaatcgactgattctgcttctgtggcttcctcacagaaaaataatgaatgcagtgagaaattgagcaagtctcaagtaagttccacctataaa |
8899183 |
T |
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| Q |
417 |
ctcatctcataacgcaacttaactatgtcatttttggtagaccttgatg |
465 |
Q |
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| T |
8899182 |
ctcatctcataacgcaacttaactatgtcatttttggtagatcttgatg |
8899134 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 49082703 - 49082766
Alignment:
| Q |
53 |
gattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaa |
116 |
Q |
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|||||||| || ||||| ||||| | ||||||||||| |||||| ||||||||||| ||||||| |
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| T |
49082703 |
gattttctcattaaaccagttcgcaggaatgagcttaggaacttgtggcagcatgtgtggagaa |
49082766 |
T |
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