View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_13 (Length: 462)
Name: NF3998_low_13
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_13 |
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| [»] scaffold0755 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Complemental strand, 1557443 - 1557020
Alignment:
| Q |
15 |
cacagaagaaccgaaacaatgtaaaatnnnnnnngggagataccgacaaagttgacggatagaatcaaggctgagatgacgatcgagtggagactggaaa |
114 |
Q |
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| T |
1557443 |
cacagaagaaccgaaacaatgtaaaataaaaaaaggggcataccgacaaagtcgacagatagaatcaaggctgagatgacgatcgagtggagactggaaa |
1557344 |
T |
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| Q |
115 |
caatgatttgacgtttttgcttagcagaatcaaaccaggtgcggtctctgtttgttttcaatttatcatgggatccttgcagcaccttatgatgttgtga |
214 |
Q |
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| T |
1557343 |
caatgatttgacgtttttgcttagcagaatcaaaccaggtgcggtctctgtttgttttcaagttatcatgggatccttgcagcaccttatgatgttgtga |
1557244 |
T |
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| Q |
215 |
tttggaagcattaaaatatgacaacagactgaaaacaaagtccaacgagttaaaaccggtcctgagagataaagtataaagacttacaccgtatcacaac |
314 |
Q |
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| T |
1557243 |
tttggcagcattaaaatatgacaacagactgaaaacaaagtccaacgagttaaaaccggtcctgagagataaagtataaagacttacaccgtatcacaac |
1557144 |
T |
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| Q |
315 |
aattagagcacgtaaatccttttcgagtaagaaccatctggaaatctttcgagcgcatcttgtttttcattgagcataagatcttttatcccaatcttaa |
414 |
Q |
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| T |
1557143 |
aattatagcacgtaaatccttttcgagtaagaaccatctggaaatctt---------tcttgtttttcattgagcataagatcttttatcccaatcttaa |
1557053 |
T |
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| Q |
415 |
aaacaaccttattgttcataaaaatgtacatat |
447 |
Q |
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| T |
1557052 |
aaacaaccttattgttcataaaaatgtacatat |
1557020 |
T |
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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 17687254 - 17687156
Alignment:
| Q |
57 |
ccgacaaagttgacggatagaatcaaggctgagatgacgatcgagtggagactggaaacaatgatttgacgtttttgcttagcagaatcaaaccaggtg |
155 |
Q |
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| T |
17687254 |
ccgacaaagtcaactgatagaatcaaggctgagatgatgatcgagtagagaccggaaacactgttttgacgttttggcttagcagaatcaaaccgggtg |
17687156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 22005523 - 22005672
Alignment:
| Q |
180 |
tcatgggatccttgcagcaccttatgatgt--tgtgatttggaagcattaaaatatgacaacagactgaaaaca--aagtccaacgagttaaaaccggtc |
275 |
Q |
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| T |
22005523 |
tcattggaacctagcagcaccttctgatctcatgtgatttggcagcaacaaaatatgatgacaaattgaaaacagaaaatgcaatgagttaaaactggtc |
22005622 |
T |
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| Q |
276 |
ctgagagataaagtataaagacttacaccgtatcacaacaattagagcac |
325 |
Q |
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| T |
22005623 |
atgtgagataaataataaagacttaaattgtatcacaacaattagagcac |
22005672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 3785 - 3721
Alignment:
| Q |
189 |
ccttgcagcaccttatgatgttgtgatttggaagcattaaaatatgacaacagactgaaaacaaa |
253 |
Q |
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| T |
3785 |
ccttgcaacaccttatgatcatgagatttggcagcagcaaaatatgacgacagactgaaaacaaa |
3721 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 44546605 - 44546552
Alignment:
| Q |
55 |
taccgacaaagttgacggatagaatcaaggctgagatgacgatcgagtggagac |
108 |
Q |
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| T |
44546605 |
taccaacaaagttgacggatagaaccaaggctgagacgacattggagtggagac |
44546552 |
T |
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