View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_15 (Length: 458)
Name: NF3998_low_15
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 38943793 - 38943515
Alignment:
| Q |
11 |
caaagggaattcacagattttattctctgtctgtttgtgttgagagacttaattttggcaaaattaattcacgtcatgtgttttgaatttcatatttgtt |
110 |
Q |
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| T |
38943793 |
caaagggaattcacggattttgttctttgcccgtttgtgttgagagatttcattttggcaaatctaatccacgtcatgtattttgaatttcatatttgtt |
38943694 |
T |
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| Q |
111 |
agtgtagataagtgataaaataatgctgtttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgtttactgttgaaacaccaac |
210 |
Q |
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| T |
38943693 |
agtgtagataagtgataaaataatgttgcttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgttaactgttgaaacaccaat |
38943594 |
T |
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| Q |
211 |
ttagtgagttcggttttcactcaattgtttaacttggttttgtcatattcaattgccttttttccgcaaaaatctgttgt |
290 |
Q |
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| T |
38943593 |
ttagtgagttcagttttcactcaattgtttaacttggttttgtcagattcaattgcct-ttttctgcaaaaatctgttgt |
38943515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 38943330 - 38943237
Alignment:
| Q |
289 |
gttgcagataaggcatttgtctataatgtgatgaatataactaggctcttgatcaatcctgacattcaagaggctcttcaattgaagaatgggt |
382 |
Q |
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| T |
38943330 |
gttgcatataaggcatttgtgcagaatgtgatgaatataactaggctcttgatcaatcctgacattccagaggctcttcaattgaagaatgggt |
38943237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 38943191 - 38943137
Alignment:
| Q |
388 |
ttttctgatgtaaatgtcattgtatatcaattgttgtgacgtgtgtgctatattt |
442 |
Q |
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| T |
38943191 |
ttttctgatgtagatgttactgtatatcaattgttgtgacgcgtgtgttatattt |
38943137 |
T |
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