View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_17 (Length: 440)
Name: NF3998_low_17
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 41697970 - 41697538
Alignment:
| Q |
1 |
ttctacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcata |
100 |
Q |
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| T |
41697970 |
ttctacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcata |
41697871 |
T |
|
| Q |
101 |
ttcatattttgttctcgaattccaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaagattgcc |
200 |
Q |
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| T |
41697870 |
ttcatattttgttctcgaattcaaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaatattgcc |
41697771 |
T |
|
| Q |
201 |
aaatgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttc |
300 |
Q |
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| T |
41697770 |
aaatgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttc |
41697671 |
T |
|
| Q |
301 |
aaatgatctcttaatattaaagtaagtattaagaacaaaattttctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697670 |
aaatgatctcttaatattaaagtaagtattaagaacaaaatttgctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaat |
41697571 |
T |
|
| Q |
401 |
tgtagctggtgggattgggcgcaacttcatttc |
433 |
Q |
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| T |
41697570 |
tgtagctggtgggattgggcgcaacttcatttc |
41697538 |
T |
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