View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_19 (Length: 416)
Name: NF3998_low_19
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 12065023 - 12064625
Alignment:
| Q |
1 |
gaacataacgccgagaagtaatctcgtaggtaatgtcatgaggaaatttacttcatcataacgcgatgtgcgaatcttaatgaaaaagaagagtgatatg |
100 |
Q |
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| T |
12065023 |
gaacataacgccgagaagtaatctcgtaggtaatgtcatgaggaaatttacttcatcataacgcgatgtgcgaatcttaatgaaaaagaagagtgatatg |
12064924 |
T |
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| Q |
101 |
gcactacataagatagataatacatctgtcgttaaaaacagattaaacatcagttcatgcgagtcatttgatttctcaatttcttcattgccttcacccg |
200 |
Q |
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| T |
12064923 |
gcactacataagatagataatacatctgtcgttaaaaacagattaaacatcagttcatgcgagtcatttgatttctcaatttcttcattgccttcacccg |
12064824 |
T |
|
| Q |
201 |
ggacagttaaggctgcagtaaacacggcagtgaggatgagagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggctttcac |
300 |
Q |
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| T |
12064823 |
ggacagttaaggctgcagtaaacacggcagtgaggatgagagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggctttcac |
12064724 |
T |
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| Q |
301 |
tagctcctggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttccaagaacttcggattcacaagtctatacacagcctg |
399 |
Q |
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| T |
12064723 |
tagctcctggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttccaagaacttcggattcacaagtctatacacagcctg |
12064625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 364
Target Start/End: Original strand, 12090850 - 12091005
Alignment:
| Q |
209 |
aaggctgcagtaaacacggcagtgaggatgagagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggctttcactagctcct |
308 |
Q |
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| T |
12090850 |
aaggctgcagcaaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctccagctttcactagctcct |
12090949 |
T |
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| Q |
309 |
ggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttcc |
364 |
Q |
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||||| |||| |||||| ||| |||| ||||||||||||| ||||||||||||| |
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| T |
12090950 |
catggctttcgaagaatacatcataaggtttcttaccatcctcatttttggcttcc |
12091005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 364
Target Start/End: Original strand, 12084837 - 12084962
Alignment:
| Q |
239 |
agagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggctttcactagctcctggtggctctcgatgaatacctcaaaaggct |
338 |
Q |
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| T |
12084837 |
agagaagccacagctatataacaactagctgtgtcttttgtccatttctctccggctttcactagctcttcatggctttcaatgaaaacatcataaggct |
12084936 |
T |
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| Q |
339 |
tcttaccatccttatttttggcttcc |
364 |
Q |
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| T |
12084937 |
tcttaccatcctcatttttggtttcc |
12084962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 12111878 - 12112047
Alignment:
| Q |
195 |
cacccgggacagttaaggctgcagtaaacacggcagtgaggatgagagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggc |
294 |
Q |
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|||| |||| ||| |||||||| | ||||| |||| |||| |||||||||| ||||||||||| | || | ||||||||||||||||| ||| | || |
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| T |
12111878 |
caccagggatagtaaaggctgctgcaaacataacagtaaggacgagagaagccacagctatataacaactagctgtgtcttttgtccatttctctgcagc |
12111977 |
T |
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| Q |
295 |
tttcactagctcctggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttcc |
364 |
Q |
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| T |
12111978 |
tttcactagctcttcatggctttcaatgaatacatcataaggcttcttaccatcctcatttctggcttcc |
12112047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 12008746 - 12008841
Alignment:
| Q |
269 |
gtgtcttttgtccatttttctccggctttcactagctcctggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttcc |
364 |
Q |
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|||||||||| |||||| ||||| ||||||||||||||| |||||| || ||||||| |||| |||||||||||||||| | ||||| ||||||| |
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| T |
12008746 |
gtgtcttttgcccatttctctccttctttcactagctcctcgtggctttcaatgaatatctcataaggcttcttaccatcatcattttcggcttcc |
12008841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 11790634 - 11790726
Alignment:
| Q |
272 |
tcttttgtccatttttctccggctttcactagctcctggtggctctcgatgaatacctcaaaaggcttcttaccatccttatttttggcttcc |
364 |
Q |
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||||||| ||||||||| ||||||||||||||||||| |||||| || | |||| |||| |||||||||| | || ||||||||||||| |
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| T |
11790634 |
tcttttgcccatttttcaccggctttcactagctccttgtggctttctgtaaatatctcatgaggcttcttatcttctgaatttttggcttcc |
11790726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 11834851 - 11834887
Alignment:
| Q |
272 |
tcttttgtccatttttctccggctttcactagctcct |
308 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||| |
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| T |
11834851 |
tcttttgcccatttttctccagctttcactagctcct |
11834887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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