View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_24 (Length: 385)
Name: NF3998_low_24
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 31223557 - 31223189
Alignment:
| Q |
1 |
acacgtgtacatttacatgtactaaaataaacataggatgttttaacaagtcatcaaacattttatctcttatattgataaaacacactctttcccctta |
100 |
Q |
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| T |
31223557 |
acacgtgtacatttacatgtactaaaataaacataggatgttttaacaagtcatcaaacattttatcccttatattgataaaacacactctttcccctta |
31223458 |
T |
|
| Q |
101 |
aaaagtaatacattatcttttagttgttagnnnnnnnnnnn---attgcaatgtcatatgaacnnnnnnngaacaagtgatttcaaattctcataaaatg |
197 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
31223457 |
aaaagtaatacattatcttttagttgttagtttttttttattttattgcaatgtcatatgaacaaaaaaagaacaagtgatttcaaattctcatgaaatg |
31223358 |
T |
|
| Q |
198 |
caaaccaagggtgtattaatttttacctgaaagacaccaaactccttgcaagcaattcgaatttcgttgatcgtttgagatctaagagattgttccctta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31223357 |
caaaccaagggtgtattaatttttacctgaaagacaccaaactccttgcaagcaattcgaatttcgttgatcgtttgagatctaagagattgttccctta |
31223258 |
T |
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| Q |
298 |
aattagacaagtctataatgggaagagtggtggagatggaaacatgatcataagtactagggcgttgcg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31223257 |
aattagacaagtctataatgggaagagtggtggagatggaaacatgatcataagtaccagggcgttgcg |
31223189 |
T |
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