View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_25 (Length: 384)
Name: NF3998_low_25
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_25 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 53514369 - 53514735
Alignment:
| Q |
18 |
aacaggtagacatagatatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcc |
117 |
Q |
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| T |
53514369 |
aacaggtagacatagatatcacacaaatactcatacctattggtacggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcc |
53514468 |
T |
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| Q |
118 |
tctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacacatttctcaagaaaatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53514469 |
tctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagt-atgcattaccactggacacatttctcaagaaaatgta |
53514567 |
T |
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| Q |
218 |
catgaaaaagaaaatgatctacaattattggagccaatac-nnnnnnncacaagcataggcaaacctgctttctttaacctctccagttacaccatcgac |
316 |
Q |
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| T |
53514568 |
catgaaaaagaaaatgatctacaattattggaaccaatacaaaaaaaacacaagcataggcaaacctgctttctttaacctctccagttacgccatcgac |
53514667 |
T |
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| Q |
317 |
aacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgtt |
384 |
Q |
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| T |
53514668 |
aacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgtt |
53514735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 53548415 - 53548784
Alignment:
| Q |
20 |
caggtagacatagatatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctc |
119 |
Q |
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| T |
53548415 |
caggtagacatagtta-cgcacaaaaactcatacctactggtatgaaggtaaaatcagcaattctcctttcaatattctggataattttgtcctttcctc |
53548513 |
T |
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| Q |
120 |
tatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac--atttctcaagaaaatgta |
217 |
Q |
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| | ||||||||||||||||||||||||| || ||||| |||||||||||| | ||||||||||||||||| ||||| | ||||||||||| || |
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| T |
53548514 |
tcttcagaaacattcctgaactagttcgaaccct--acaggaaggggatatatctagagtaatgcattaccactagacactagtctctcaagaaaaggtt |
53548611 |
T |
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| Q |
218 |
catg------aaaaagaaaatgatctacaattattggagccaatacnnnnnnncacaagcataggcaaacctgctttctttaacctctccagttacacca |
311 |
Q |
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||| ||||| |||||||||||||||||||||| || |||| |||||||| ||||||||||||||||| || || |||||| | | |
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| T |
53548612 |
tatggaaagaaaaaaaaaaatgatctacaattattggaaccgatacaaaaaaacacaagcaaaggcaaacctgctttctgtactctttccagtcttgcta |
53548711 |
T |
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| Q |
312 |
tcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgtt |
384 |
Q |
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||||| ||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
53548712 |
tcgacgacacttgattttgccaagaaaggcttggccagattgatcaaatgctcacattcttctttggactgtt |
53548784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 53510723 - 53510929
Alignment:
| Q |
22 |
ggtagacatagatatcacacaaata-ctcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctct |
120 |
Q |
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||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53510723 |
ggtagacatagatatcacacaaaaaactcatacctactggtatggaggtaatatcagcaattctctgttcaatattctggacaattttgtcctttcctct |
53510822 |
T |
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| Q |
121 |
atccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccact-ggacac-att-tctcaagaaaatgta |
217 |
Q |
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||||||||| |||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
53510823 |
ctccagaaaccttcctgaactagttcgagcgct--acatgcaggggatatattaaaagtaatgcattaccactaagacactattctctcaagaaaatgta |
53510920 |
T |
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| Q |
218 |
catgaaaaa |
226 |
Q |
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||||||||| |
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| T |
53510921 |
catgaaaaa |
53510929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 53524855 - 53525014
Alignment:
| Q |
38 |
acacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacattcctg |
137 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||| |
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| T |
53524855 |
acacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctg |
53524954 |
T |
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| Q |
138 |
aactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac |
199 |
Q |
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||||||||||| ||| ||| ||| |||||||| |||||||||||||||||| || ||||| |
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| T |
53524955 |
aactagttcgaacgct--acatgcatgggatataacaaaagtaatgcattaccgctcgacac |
53525014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 53525047 - 53525166
Alignment:
| Q |
265 |
cacaagcataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctc |
364 |
Q |
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|||||||||||||||||||| || | || ||| ||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
53525047 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
53525146 |
T |
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| Q |
365 |
acattcttcttttgactgtt |
384 |
Q |
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|||||||||||||||||||| |
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| T |
53525147 |
acattcttcttttgactgtt |
53525166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 276 - 384
Target Start/End: Original strand, 53510938 - 53511046
Alignment:
| Q |
276 |
gcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
375 |
Q |
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||||||||||||||| || ||| |||||| | ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53510938 |
gcaaacctgctttctctaccctttccagtcaagccatcaacaacaagcgatcttgtcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
53511037 |
T |
|
| Q |
376 |
ttgactgtt |
384 |
Q |
| |
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||||||||| |
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| T |
53511038 |
ttgactgtt |
53511046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 20197015 - 20197167
Alignment:
| Q |
34 |
tatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacatt |
133 |
Q |
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||||||||||| |||||||||| |||||||||| ||||||||| ||||||| | |||||||||| || |||||| ||||||||||| || | | || |
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| T |
20197015 |
tatcacacaaaatctcatacctactggtatggagataatatcaggaattctctgctcaatattcttgataattttatcctttcctctcctcaaagtcctt |
20197114 |
T |
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| Q |
134 |
cctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcatta |
188 |
Q |
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|||||||||||||| ||| | ||| || |||||||||||||||||||||||| |
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| T |
20197115 |
tctgaactagttcgaaggct--ataggtagaggatatatcaaaagtaatgcatta |
20197167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 20197301 - 20197363
Alignment:
| Q |
322 |
gtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgtt |
384 |
Q |
| |
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|||||||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
20197301 |
gtgatctttccaagtaaggcttgccaagtttgatcaaatgctcacattcttcttttgactgtt |
20197363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 16608492 - 16608454
Alignment:
| Q |
341 |
cttggcaagattgatcaaatgctcacattcttcttttga |
379 |
Q |
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| T |
16608492 |
cttggcaagattgatcaaatgctcacattcttattttga |
16608454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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