View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_27 (Length: 359)
Name: NF3998_low_27
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_27 |
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| [»] chr6 (10 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 4611981 - 4612329
Alignment:
| Q |
11 |
cacagactaaaatgtacactatgttgttttccattatcttttttaattnnnnnnnn-ttattctagttttctcatagagtatatcaaaaagtggtggttt |
109 |
Q |
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|||| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
4611981 |
cacaaactaaaatgtacactatgttgtttgctattatcttttttaattaaaaaaaaattattctagttttctcatagagtatatcaaaaagtggtggctt |
4612080 |
T |
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| Q |
110 |
cactagtatgcatcaattattgtgttaagttggaattttttcattttaaaagaaaaatatctcagactttgtaagcttccttgtcttttcctctattatc |
209 |
Q |
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| T |
4612081 |
cactagtatgcatcaattattgtgttaagttggaattttttcattttaaaagaaaaatatctcagactttgtaagcttccttgtcttttcctctattatc |
4612180 |
T |
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| Q |
210 |
ttttttccacaaatccaagaaacattggcaatattgctattaaaggttaaaaccattggcttatccatgtacacaacattcaaacacaaactcagaaatg |
309 |
Q |
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| T |
4612181 |
tttt-tccacaaatccaagaaacattggcaatattgctattaaaggttaaaaccattggcttatccctgtacacaacattcaaacacaaactcagaaatg |
4612279 |
T |
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| Q |
310 |
agtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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| T |
4612280 |
agtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca |
4612329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 4587221 - 4587149
Alignment:
| Q |
287 |
attcaaacacaaactcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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| T |
4587221 |
attcaaacacaaactcagaaatgagtgattcaaaacctcatgctgtgttaatcccatctccagttcaaggcca |
4587149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 4558720 - 4558642
Alignment:
| Q |
283 |
caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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| T |
4558720 |
caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggcca |
4558642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 4572561 - 4572483
Alignment:
| Q |
283 |
caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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||||||||||||||||| |||| |||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
4572561 |
caacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggcca |
4572483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 3173561 - 3173520
Alignment:
| Q |
318 |
aaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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| T |
3173561 |
aaaaccacatgcagtgttaactccatatccagttcaaggcca |
3173520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 4599756 - 4599683
Alignment:
| Q |
283 |
caacattcaaacacaaactcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaagg |
356 |
Q |
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||||||||||||||||||||| ||||||||| | ||||| ||||||||| || ||||||| ||| ||||||| |
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| T |
4599756 |
caacattcaaacacaaactcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaagg |
4599683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 4572746 - 4572668
Alignment:
| Q |
94 |
caaaaagtggtggtttcactagtatgcatcaattattgtgttaagttggaattttttcattttaaaagaaaaatatctca |
173 |
Q |
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|||||||||||| || ||||||||||||||||||||||| | | || ||||| |||||| ||| |||||||| |||||| |
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| T |
4572746 |
caaaaagtggtgacttgactagtatgcatcaattattgtg-tcacttagaattatttcatattataagaaaaagatctca |
4572668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 4255395 - 4255432
Alignment:
| Q |
322 |
ccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |
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| T |
4255395 |
ccacatgctgtgttgattccatatccagttcaaggcca |
4255432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 4513549 - 4513590
Alignment:
| Q |
318 |
aaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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|||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
4513549 |
aaaaccacatgctgtgttgattccatatccacttcaaggcca |
4513590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 4576009 - 4575972
Alignment:
| Q |
322 |
ccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| |
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| T |
4576009 |
ccacatgcagtgttaactccatttccagttcaaggcca |
4575972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 2382 - 2341
Alignment:
| Q |
318 |
aaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
2382 |
aaaaccacatgctgtgttgattccatatccagttcaaggcca |
2341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 20862380 - 20862418
Alignment:
| Q |
318 |
aaaaccacatgcagtgttaattccatatccagttcaagg |
356 |
Q |
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| T |
20862380 |
aaaaccacatgcagtgttaactccatatccacttcaagg |
20862418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 1282992 - 1282950
Alignment:
| Q |
317 |
caaaaccacatgcagtgttaattccatatccagttcaaggcca |
359 |
Q |
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||||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
1282992 |
caaaaccacatgctgtgttgattccatatccagctcaaggcca |
1282950 |
T |
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