View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_low_3 (Length: 807)
Name: NF3998_low_3
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_3 |
 | |
|
| [»] scaffold0187 (6 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 75 - 785
Target Start/End: Original strand, 37914241 - 37914940
Alignment:
| Q |
75 |
ctaaatatttacaataattagcttcaagagttctccaataacagttattgggcacatagtttaagtaattagaagtggaaaagtgccaataatataaata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37914241 |
ctaaatatttacaataattagcttcaagagttctccaataacagttattgtgcacatagtttaagtaattagaagtggaaaagtgccaataatataacta |
37914340 |
T |
|
| Q |
175 |
acttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggaccataga |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37914341 |
acttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggaccacaga |
37914440 |
T |
|
| Q |
275 |
aaaagttccttgccaaagttgtaacaactctgccatgtcagcatgagttgaaccatttacattggtcttttaccactgctttataagattcttaatttca |
374 |
Q |
| |
|
||| || ||||| |||| | ||||| ||||||||| ||||||||||||| || |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
37914441 |
aaatgtaccttgacaaacct----------tgccaactcagcatgatttgaaccatttacgttagtcttt-accactgctttatcagattcttaatttca |
37914529 |
T |
|
| Q |
375 |
cactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcatt |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37914530 |
cactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcatt |
37914629 |
T |
|
| Q |
475 |
aatcatcatgggaggtggtaaggctaagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37914630 |
aatcatcatgggaggtggtaaggctaagtcttcttcaggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaggatactatgat |
37914729 |
T |
|
| Q |
575 |
gattgcggatgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaat |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37914730 |
gattgcggatgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgctgagcccaatattaacagcagagctgaagatttcatccgcaaat |
37914829 |
T |
|
| Q |
675 |
acaagaatcgcatttcagaatccgaacgctatcaagttgatccggctgcctagaatgcataatactattgattatgtaccatatgtatatatttcattgt |
774 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37914830 |
acaagaatcgcatatcagaatccgaacgctatcaagttgatccggctgcctagaatgcataatactattgattacgtaccatatgtatatatttcattgt |
37914929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 452
Target Start/End: Original strand, 37869735 - 37870011
Alignment:
| Q |
173 |
taacttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggaccata |
272 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37869735 |
taacgtgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggaccaca |
37869834 |
T |
|
| Q |
273 |
gaaaaagttccttgccaaagttgtaacaactctgccatgtcagcatgagttgaaccatttacattggtcttttaccactgctttataagattcttaattt |
372 |
Q |
| |
|
||||| | | ||| ||||||||| ||||| |||||| |||||| ||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
37869835 |
gaaaatg-tgcttcacaaagttgttacaaccctgccaagtcagcttgatttgaaccatttacattggtc-tttaccactgcttta-cagattcttaattt |
37869931 |
T |
|
| Q |
373 |
cacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaa |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37869932 |
aacactgttaatcacttatgtagtataaataagagatattacattgtcatttaaaaaccaagacaaccacttctagcaaa |
37870011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 396 - 773
Target Start/End: Original strand, 37883657 - 37884028
Alignment:
| Q |
396 |
tataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcattaatcatcatgggaggtggtaa |
495 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||| |||||| ||||||||||| ||||| | ||||||||| |||||||| |||||| |
|
|
| T |
37883657 |
tataaataagagatatttccttgtcatttgaaaaacaatacaatcgcttctagcaaaaaacttagc---------cattaatcaccatgggagatggtaa |
37883747 |
T |
|
| Q |
496 |
--ggct----aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgatgattgcggatgcaag |
589 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||| ||| |||||||||||||||| || ||||| |
|
|
| T |
37883748 |
taggcagaacaagtcttcttcaggtttcttctcaattttcaattgcttcacatctaagaataagtctagggcaggatactatgatgattgtgggcgcaag |
37883847 |
T |
|
| Q |
590 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcattt |
689 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
37883848 |
acttggcctagcgatgaagacaaaggtaactggggtgttgctgagcccaatattaacaggagagctaaagatttcatccgcaaatacaagaatcacatat |
37883947 |
T |
|
| Q |
690 |
cagaatccgaacgctatcaagttgatccggctgcctagaatgcataatactattgattatgtaccatatgtatatatttcattg |
773 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
37883948 |
cagaatccgaatgctatcaagttgatccggctgcctagaatgcataa---tatctattatgtaccatatgtatatatttcattg |
37884028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 500 - 736
Target Start/End: Original strand, 37861905 - 37862141
Alignment:
| Q |
500 |
aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgatgattgcggatgcaagacatggccta |
599 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||| ||| |||||||||| |||||| | ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
37861905 |
aagtcttcttcaggtttcttctcaattttcagttgcttcacatctaagaataagtatagagcggggtactatgatgattgcgggcgcaagacttggccta |
37862004 |
T |
|
| Q |
600 |
gcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcatttcagaatccga |
699 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862005 |
gcgatgatgacaaaggtaactggggtgttgcagagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgcatttcagaatccga |
37862104 |
T |
|
| Q |
700 |
acgctatcaagttgatccggctgcctagaatgcataa |
736 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
37862105 |
acgttatcaagttgatccgtctgctgagaatgcataa |
37862141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 456 - 723
Target Start/End: Original strand, 37870037 - 37870311
Alignment:
| Q |
456 |
cttatctagcag-tagcattaatcatcatgggaggtggtaa--ggct----aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaaga |
548 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| | ||||| ||| |||| |
|
|
| T |
37870037 |
cttatccagcagctagcattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaaga |
37870136 |
T |
|
| Q |
549 |
ataagtctagagcaagatactatgatgattgcggatgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacag |
648 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||| || || |||||||| |
|
|
| T |
37870137 |
ataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacagaggtaactggggtgttgctgagcctaacattaacag |
37870236 |
T |
|
| Q |
649 |
cagagctgaagatttcatccgcaaatacaagaatcgcatttcagaatccgaacgctatcaagttgatccggctgc |
723 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
37870237 |
gagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgc |
37870311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 145 - 452
Target Start/End: Original strand, 37861530 - 37861833
Alignment:
| Q |
145 |
agaagtggaaaagtgccaataata-taaataacttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatc-agtgattttggttgaa |
242 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||| | ||||||||||||||| |||| || |||||||||||||||| |||||| | ||||||| ||| |
|
|
| T |
37861530 |
agaagtggaaatgtgccaataataataactaacgtaaatcttgagaagagaagaaa-gttcaaaagcagaaccaatgataatcgtttttttttggtagaa |
37861628 |
T |
|
| Q |
243 |
ttctctcatgtacgaaactagcggaccatagaaaaagttccttgccaaagttgtaacaactctgccatgtcagcatgagttgaaccatttacattggtct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | | |||| ||||||||| ||||| |||||| ||||||||| |||||||||||| || ||| |
|
|
| T |
37861629 |
ttctctcatgtacgaaactagcggaccacagaaaatg-tgcttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttaggttagtc- |
37861726 |
T |
|
| Q |
343 |
tttaccactgctttataagattcttaatttcacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaatcac |
442 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||| | | |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37861727 |
tttaccactcctttattagattcttaattttacattctgaatcacttat---atataaataagagatattacattgtcatttgaaaaccaagacaatcat |
37861823 |
T |
|
| Q |
443 |
ttctagcaaa |
452 |
Q |
| |
|
|||||||||| |
|
|
| T |
37861824 |
ttctagcaaa |
37861833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 37883493 - 37883621
Alignment:
| Q |
250 |
atgtacgaaactagcggaccatagaaaaagttccttgccaaagttgtaacaactctgccat-gtcagcatgagttgaaccatttacattggtcttttacc |
348 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||| ||||| ||||| |||||||||| |||||||||||| || |||||| ||| |
|
|
| T |
37883493 |
atgtacgaaactagcggaccacagaaaaagtgccttaagaaagttgttacaaccttgccaaagtcagcatgatttgaaccatttatgttagtcttt-acc |
37883591 |
T |
|
| Q |
349 |
actgctttataagattcttaatttcacact |
378 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
37883592 |
actgctttatcagattcttaatttcacact |
37883621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 37883369 - 37883436
Alignment:
| Q |
141 |
aattagaagtggaaaagtgccaataatataaataacttgaatcttgagaagagaggaaaagtacaaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
37883369 |
aattagaagtggaaaagtgccaataatataactaacgtgaatcttgagaggagaagaaaagtacaaaa |
37883436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37914143 - 37914210
Alignment:
| Q |
11 |
atattaagatttggttacttaattcaaacctaaaatgacctgcatatgaggaaaaatatattatctaa |
78 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
37914143 |
atattaagatttggttacttagttcaaacctaaaatgacttgcatctgagaaaaaatatattatctaa |
37914210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 785
Target Start/End: Complemental strand, 8919864 - 8919824
Alignment:
| Q |
745 |
attatgtaccatatgtatatatttcattgtttatttctcta |
785 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
8919864 |
attatgtatcatatgtatgtatttcattgtttatttctcta |
8919824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 164; Significance: 3e-87; HSPs: 6)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 396 - 782
Target Start/End: Original strand, 13566 - 13947
Alignment:
| Q |
396 |
tataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcattaatcatcatgggaggtggtaa |
495 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
13566 |
tataaataagagatatttccttgtcatttgaaaaacaagacaatcacttctagcaaaaaacttagc---------cattaatcatcatgggaggtggtaa |
13656 |
T |
|
| Q |
496 |
--ggct----aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgatgattgcggatgcaag |
589 |
Q |
| |
|
||| |||||||| | |||||||||||||||| || ||||| ||| || ||||||| |||| || | |||||||||||||||||| ||||| |
|
|
| T |
13657 |
taggcggaacaagtcttccacaagtttcttctcaattttcaattgcttcacatctaaaaataagtatagatcagggtactatgatgattgcggacgcaag |
13756 |
T |
|
| Q |
590 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcattt |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13757 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgagcctaacattaacaggagagctgaagatttcatccgcaaatgcaagaatcgcattt |
13856 |
T |
|
| Q |
690 |
cagaatccgaacgctatcaagttgatccggctgcctagaatgcataata-ctattgattatgtaccatatgtatatatttcattgtttatttct |
782 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||||||| |||| || |||||||||||||||||||| | |||||||||| |
|
|
| T |
13857 |
cagaatccgatagctatcaagttgatccggctctctagtatgcataatatctat---atacgtaccatatgtatatatttcgtcgtttatttct |
13947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 396 - 782
Target Start/End: Original strand, 23894 - 24275
Alignment:
| Q |
396 |
tataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcattaatcatcatgggaggtggtaa |
495 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
23894 |
tataaataagagatatttccttgtcatttgaaaaacaagacaatcacttctagcaaaaaacttagc---------cattaatcatcatgggaggtggtaa |
23984 |
T |
|
| Q |
496 |
--ggct----aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgatgattgcggatgcaag |
589 |
Q |
| |
|
||| |||||||| | |||||||||||||||| || ||||| ||| || ||||||| |||| || | |||||||||||||||||| ||||| |
|
|
| T |
23985 |
taggcggaacaagtcttccacaagtttcttctcaattttcaattgcttcacatctaaaaataagtatagatcagggtactatgatgattgcggacgcaag |
24084 |
T |
|
| Q |
590 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcattt |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24085 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgagcctaacattaacaggagagctgaagatttcatccgcaaatgcaagaatcgcattt |
24184 |
T |
|
| Q |
690 |
cagaatccgaacgctatcaagttgatccggctgcctagaatgcataata-ctattgattatgtaccatatgtatatatttcattgtttatttct |
782 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||||||| |||| || |||||||||||||||||||| | |||||||||| |
|
|
| T |
24185 |
cagaatccgatagctatcaagttgatccggctctctagtatgcataatatctat---atacgtaccatatgtatatatttcgtcgtttatttct |
24275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 396 - 737
Target Start/End: Complemental strand, 4219 - 3881
Alignment:
| Q |
396 |
tataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagcaaatcacttatctagcagtagcattaatcatcatgggaggtggtaa |
495 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||| |||||| ||||||||||| ||||| | ||||||||| |||||||| |||||| |
|
|
| T |
4219 |
tataaataagagatatttccttgtcatttgaaaaacaatacaatcgcttctagcaaaaaacttagc---------cattaatcaccatgggagatggtaa |
4129 |
T |
|
| Q |
496 |
--ggct----aagtcttcttccggtttcttctcaatttttaaaatcttcaaatcaaagaataagtctagagcaagatactatgatgattgcggatgcaag |
589 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||| ||| |||||||||||||||| || ||||| |
|
|
| T |
4128 |
taggcagaacaagtcttcttcaggtttcttctcaattttcaattgcttcacatctaagaataagtctagggcaggatactatgatgattgtgggcgcaag |
4029 |
T |
|
| Q |
590 |
acatggcctagcgatgaagacaaaggtaactggggtgttgctgaacccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcattt |
689 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
4028 |
acttggcctagcgatgaagacaaaggtaactggggtgttgctgagcccaatattaacaggagagctgaagatttcatccgcagatacaagaatcgcatct |
3929 |
T |
|
| Q |
690 |
cagaatccgaacgctatcaagttgatccggctgcctagaatgcataat |
737 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
3928 |
cagaatccgaacgttatcaagttgatccagcgtcctagaatgcataat |
3881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 13392 - 13530
Alignment:
| Q |
239 |
tgaattctctcatgtacgaaactagcggaccatagaaaaagttccttgccaaagttgtaacaactctgccatgtcagcatgagttgaaccatttacattg |
338 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||| ||||| ||||||||| ||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
13392 |
tgaattctctcatgtatgaaactagtgatccatagaaaaagtgccttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttacattg |
13491 |
T |
|
| Q |
339 |
gtct-tttaccactgctttataagattcttaatttcaca |
376 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
13492 |
gtctaattaccactcctttattagattcttaatttcaca |
13530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 23720 - 23858
Alignment:
| Q |
239 |
tgaattctctcatgtacgaaactagcggaccatagaaaaagttccttgccaaagttgtaacaactctgccatgtcagcatgagttgaaccatttacattg |
338 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||| ||||| ||||||||| ||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
23720 |
tgaattctctcatgtatgaaactagtgatccatagaaaaagtgccttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttacattg |
23819 |
T |
|
| Q |
339 |
gtct-tttaccactgctttataagattcttaatttcaca |
376 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
23820 |
gtctaattaccactcctttattagattcttaatttcaca |
23858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 141 - 378
Target Start/End: Complemental strand, 4505 - 4255
Alignment:
| Q |
141 |
aattagaagtggaaaagtgccaataatataaataacttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataa----tcagtgattttg |
236 |
Q |
| |
|
||||||||||| | |||| |||||||||||| |||| ||||||||||||||||| ||||||||||||| || |||||| ||||| |||||| ||||| |
|
|
| T |
4505 |
aattagaagtgaagaagtcccaataatataactaacatgaatcttgagaagagaagaaaagtacaaaatcaaaaccaagaataatcagtcagtgtttttg |
4406 |
T |
|
| Q |
237 |
gttgaattctctcatgtacgaaacta------gcggaccatagaaaaagttccttgccaaagttgtaacaactctgccatgtcagcatg----agttgaa |
326 |
Q |
| |
|
|| ||||| ||| ||||||||||||| ||||||| |||||| |||||||| |||||||| ||| |||||| |||||||| | ||||| |
|
|
| T |
4405 |
gtagaattgtcttatgtacgaaactatcggactcggaccacagaaaatgttccttgagaaagttgttgaaaccctgccaactcagcatgattaatttgaa |
4306 |
T |
|
| Q |
327 |
ccatttacattggtcttttaccactgctttataagattcttaatttcacact |
378 |
Q |
| |
|
||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4305 |
ccatttatgttagtc-tttaccactgctttatcagattcttaatttcacact |
4255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 745 - 783
Target Start/End: Complemental strand, 11775705 - 11775667
Alignment:
| Q |
745 |
attatgtaccatatgtatatatttcattgtttatttctc |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11775705 |
attatgtaccatatgtatatatttcattgtttatttctc |
11775667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 35538134 - 35538174
Alignment:
| Q |
745 |
attatgtaccatatgtatatatttcattgtttatttctcta |
785 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
35538134 |
attatgtaccatatgtatgtatttcattgtttatttttcta |
35538174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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