View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_31 (Length: 342)
Name: NF3998_low_31
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 163 - 336
Target Start/End: Original strand, 37942050 - 37942222
Alignment:
| Q |
163 |
atatctcaccagtgtgggagtagtaccactaaacatgtgattatcgttaatcaaatcaacaagaatcttccatgtgcaaccaactgaatataggtttaga |
262 |
Q |
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| T |
37942050 |
atatctcatcagtgtgggagtagtaccactaaacatgtgattatcgttaatcaaatcaacaagaatcttccatgtgcaaccaactgaatataggtttaga |
37942149 |
T |
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| Q |
263 |
taagatggggatccaacatatttcaaaggggcttccattaatcacattccacacacagagaggtcctatgctac |
336 |
Q |
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| T |
37942150 |
taa-atggggatccaccatatttcaaagggtcttccattaatcacattccacacacagagaggtcttatgctac |
37942222 |
T |
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Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 37941864 - 37942007
Alignment:
| Q |
19 |
aaaaaagttttaaagatgtcatcaaacaaaaactctaaaattaattggagaaagtctccaaaacaagaaaatacatcgactcaatcgaaatgttaaagtt |
118 |
Q |
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| T |
37941864 |
aaaaaagttttaaagatgtcatcaaacaaaaactctaaaattaattggagaaagtctccaaaacaagaaaatacatcgactcaatcgaaatgttaaagtt |
37941963 |
T |
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| Q |
119 |
aataggctaatttgcatttttatagccctcacaccaattatggt |
162 |
Q |
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| T |
37941964 |
aataggctaatttgcacttttattgccctcacaccaattatggt |
37942007 |
T |
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