View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_32 (Length: 341)
Name: NF3998_low_32
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 2157216 - 2156909
Alignment:
| Q |
20 |
acttgttgagttcccacccattttacaatgttgcataaaatgatcagataagcagagaggatcaaccgccgatgtaccaatccatcattgaagaagttgc |
119 |
Q |
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| T |
2157216 |
acttgttgagttcccacccattttaccatgttgcataaaatgatcagataagtagagaggatcaaccgccgatgtaccaatccatcattgaagaagttgc |
2157117 |
T |
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| Q |
120 |
caaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaa-aaaattatgttgaagaatgccacgcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2157116 |
caaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaaaaaaattatgttgaagaatgccacgcac |
2157017 |
T |
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| Q |
219 |
gcctatgtgagttattctttgagggaagttggttgtaaggaagacgtcacgcaaaaaattataagaagccctttcatctcatacggctactccttcatgt |
318 |
Q |
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||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157016 |
gcctatgtgagttat--tttgagggaagttggttctaatgaagacgtcacgcaaaaaattataagaagccctttcatctcatacggctactccttcatgt |
2156919 |
T |
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| Q |
319 |
gtgtgatgat |
328 |
Q |
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|||| ||||| |
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| T |
2156918 |
gtgtaatgat |
2156909 |
T |
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