View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3998_low_4 (Length: 599)

Name: NF3998_low_4
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3998_low_4
NF3998_low_4
[»] chr7 (2 HSPs)
chr7 (20-594)||(39489697-39490266)
chr7 (82-131)||(7505396-7505445)
[»] chr1 (2 HSPs)
chr1 (20-594)||(12748771-12749340)
chr1 (20-142)||(24683429-24683551)
[»] scaffold0564 (1 HSPs)
scaffold0564 (164-594)||(10485-10912)
[»] chr3 (3 HSPs)
chr3 (20-165)||(27971527-27971672)
chr3 (20-165)||(6885501-6885646)
chr3 (20-165)||(33985140-33985285)
[»] chr6 (3 HSPs)
chr6 (20-165)||(20142614-20142759)
chr6 (20-165)||(22190080-22190225)
chr6 (82-131)||(27966651-27966700)
[»] chr4 (1 HSPs)
chr4 (20-165)||(3410773-3410918)
[»] chr5 (3 HSPs)
chr5 (20-151)||(4971288-4971419)
chr5 (20-154)||(4696708-4696834)
chr5 (108-143)||(6453254-6453289)
[»] chr8 (2 HSPs)
chr8 (20-142)||(8097207-8097329)
chr8 (108-143)||(45451601-45451636)


Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 39490266 - 39489697
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39490266 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 39490167  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttattta 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39490166 tacaattgttttatagtttatattattgtcaatagaactggctgaagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttattta 39490067  T
Q  220 gcatgtattgatgtacacccctatcaagtgactcaacatgttgcttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttc 319  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39490066 ccatgtattgatgtacacccctatcaagtgactcaacatgttgcttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttc 39489967  T
Q  320 atgacatagttcctgaattgaagcatattaactgtt--agtctgttacatcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgt 417  Q
    ||| ||||||||||||||||||||||||||||||||  | |  |||  ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  39489966 atggcatagttcctgaattgaagcatattaactgttacattaagtt-tatcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgt 39489868  T
Q  418 ccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaatagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgta 517  Q
    ||||||||||||||    |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  39489867 ccttcaataaaagc----ttgttacaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatgatgacatgtgcaaagaagtcagtactgta 39489774  T
Q  518 tctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatgcttct 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39489773 tctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatggttct 39489697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 7505396 - 7505445
Alignment:
Q  82 tggttttgaaggtatggtttttatagttctatcatttttacaattgtttt 131  Q
    |||||||||||| |||| ||||| |||||||||||||||| |||| ||||    
T  7505396 tggttttgaaggcatggcttttaaagttctatcatttttataattttttt 7505445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Original strand, 12748771 - 12749340
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12748771 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 12748870  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttattta 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12748871 tacaattgttttatagtttatattattgtcaatagaactggctgaagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttattta 12748970  T
Q  220 gcatgtattgatgtacacccctatcaagtgactcaacatgttgcttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttc 319  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12748971 ccatgtattgatgtacacccctatcaagtgactcaacatgttgcttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttc 12749070  T
Q  320 atgacatagttcctgaattgaagcatattaactgtt--agtctgttacatcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgt 417  Q
    ||| ||||||||||||||||||||||||||||||||  | |  |||  ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  12749071 atggcatagttcctgaattgaagcatattaactgttacattaagtt-tatcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgt 12749169  T
Q  418 ccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaatagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgta 517  Q
    ||||||||||||||    |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  12749170 ccttcaataaaagc----ttgttacaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatgatgacatgtgcaaagaagtcagtactgta 12749263  T
Q  518 tctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatgcttct 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12749264 tctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatggttct 12749340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 24683551 - 24683429
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||| ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  24683551 tatagaaattcaatgaaagatgattttgttcaggctctcaagtgcgcacgtagctggttacatggttttgaaggtatgatttttaaagttctatcatttt 24683452  T
Q  120 tacaattgttttatagtttatat 142  Q
    |||||| ||||||||||||||||    
T  24683451 tacaatggttttatagtttatat 24683429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 164 - 594
Target Start/End: Complemental strand, 10912 - 10485
Alignment:
Q  164 aagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttatttagcatgtattgatgtacacccctatcaagtgactcaacatgttgc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10912 aagtggttttaaggtactgaaccattaatatggttcaaatcagttcagtttatttaccatgtattgatgtacacccctatcaagtgactcaacatgttgc 10813  T
Q  264 ttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttcatgacatagttcctgaattgaagcatattaactgttagtct--g 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |  |    
T  10812 ttgagaccaaacaattacagagattaaaagcaacatgtcttttagcaggggagttcatggcatagttcctgaattgaagcatattaactgttacattaag 10713  T
Q  362 ttacatcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatg 461  Q
    ||  ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||| ||||||||||||||||    
T  10712 ttt-atcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaggttctggaatgcaatg 10618  T
Q  462 ttaatagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaaga 561  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10617 ttaatagttaaacagcatagtgtgatgatgacatgtgcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaaga 10518  T
Q  562 tattgtgaattgttccggctagcctatgcttct 594  Q
    |||||||||||||||||||||||||||| ||||    
T  10517 tattgtgaattgttccggctagcctatggttct 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 27971527 - 27971672
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27971527 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 27971626  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27971627 tacaattgttttatagtttatattattgtcaatagaactgactgaa 27971672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 6885646 - 6885501
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6885646 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttgcatggttttgaaggtatggtttttatagttctatcatttt 6885547  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6885546 tacaattgttttatagtttatattattgtcaatagaactgactgaa 6885501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 33985140 - 33985285
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33985140 tatataagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtaactggttacatggttttgaaggtatggtttttatagttctatcatttt 33985239  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  33985240 tacaattgttttatagtttatattattgtcgatagaactgactgaa 33985285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 20142614 - 20142759
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20142614 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacatagctggttacatggttttgaaggtatggtttttatagttctatcatttt 20142713  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  20142714 tacaattgttttatagtttatattattgtcaagagaactgactgaa 20142759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 22190225 - 22190080
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22190225 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacatagctggttacatggttttgaaggtatggtttttatagttctatcatttt 22190126  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  22190125 tacaattgttttatagtttatattattgtcaagagaactgactgaa 22190080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 27966700 - 27966651
Alignment:
Q  82 tggttttgaaggtatggtttttatagttctatcatttttacaattgtttt 131  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||| ||||    
T  27966700 tggttttgaaggcatgacttttaaagttctatcatttttacaattttttt 27966651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 3410918 - 3410773
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3410918 tatagaagttaaatgaaagatgattatgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 3410819  T
Q  120 tacaattgttttatagtttatattattgtcaatagaactgactgaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3410818 tacaattgttttatagtttatattattgtcaatagaactgattgaa 3410773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 4971419 - 4971288
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4971419 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctagttacatggttttgaaggtatgatttttatagttctatcatttt 4971320  T
Q  120 tacaattgttttatagtttatattattgtcaa 151  Q
    |||||||||||||||||||||||| |||||||    
T  4971319 tacaattgttttatagtttatattgttgtcaa 4971288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 4696834 - 4696708
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  4696834 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtat--------tagttctatcatttt 4696743  T
Q  120 tacaattgttttatagtttatattattgtcaatag 154  Q
    |||||||||||||||||||||||||||||||||||    
T  4696742 tacaattgttttatagtttatattattgtcaatag 4696708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 6453254 - 6453289
Alignment:
Q  108 ttctatcatttttacaattgttttatagtttatatt 143  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6453254 ttctatcatttttacaattattttatagtttatatt 6453289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 8097329 - 8097207
Alignment:
Q  20 tatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggttacatggttttgaaggtatggtttttatagttctatcatttt 119  Q
    ||||| ||||||||||||||||| |  ||||   || |||| ||| ||||||| | ||||||||||||| ||||||   ||||||  |||||||||||||    
T  8097329 tatagtagttcaatgaaagatgaattggttccatctgtcttttgcacacgtagttagttacatggttttaaaggtaccatttttaatgttctatcatttt 8097230  T
Q  120 tacaattgttttatagtttatat 142  Q
    |  ||| ||| ||||||||||||    
T  8097229 ttaaatggttatatagtttatat 8097207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 45451636 - 45451601
Alignment:
Q  108 ttctatcatttttacaattgttttatagtttatatt 143  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45451636 ttctatcatttttacaattattttatagtttatatt 45451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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