View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_40 (Length: 280)
Name: NF3998_low_40
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 35822239 - 35822494
Alignment:
| Q |
13 |
ataataaacattataataggagacccaaggaggtgtgtcgatgcttgaaataatttgggcatatatgtaatgtattcatggcagttatgtattgtatttt |
112 |
Q |
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| T |
35822239 |
ataataaacattataataggagacccaaggaggtgtgtcgatgcttgaaataatttgggcatatatgtaatgtattcatggcagttatgttttgtatttt |
35822338 |
T |
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| Q |
113 |
ggcagtaatgcatttgtagaattatagcaactcttatttcaagcatcgacacaccacaaatgcttcaaagctctctaattccatttgtagaagaggccat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35822339 |
ggcagtaatgcatttgtagaattatagcaactcttatttcaagcatcgacacaccacaaatgcttcaaagctctctaattccatttgtagaagaggccat |
35822438 |
T |
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| Q |
213 |
ggtctgtccctattttggcagtatggcagtttgtagcatcttcacatggaacttct |
268 |
Q |
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| T |
35822439 |
ggtctgtccctattttggcagtatggcagtttgtggcatcttcacatggaacttct |
35822494 |
T |
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