View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_41 (Length: 274)
Name: NF3998_low_41
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 4264011 - 4263766
Alignment:
| Q |
6 |
ttcatttcatttctctgtttcttctatattaatattgcnnnnnnnnnaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaag |
105 |
Q |
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| T |
4264011 |
ttcatttcatttctctgtttcttctatattaatattgcttatttttgaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaag |
4263912 |
T |
|
| Q |
106 |
ttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgactatgatgcacagacactcctagaatcctcat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4263911 |
ttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgactatgatgcacggacactcctagaatcctcag |
4263812 |
T |
|
| Q |
206 |
attaggcgtgtcctgttgtcaggcacgttatgattccattgaatta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4263811 |
attaggcgtgtcctgttgtcaggcacgttatgattccattgaatta |
4263766 |
T |
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