View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_42 (Length: 261)
Name: NF3998_low_42
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_42 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 2156672 - 2156931
Alignment:
| Q |
1 |
ttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaatt |
100 |
Q |
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| T |
2156672 |
ttcgtattttggatatccatatagctattgaagactgttgaagtgactaattccagaaaatttagcagcgctccgttgaggacaaagaaattgttcaagt |
2156771 |
T |
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| Q |
101 |
gactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatactaagttgataatgaga |
200 |
Q |
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| T |
2156772 |
gactatttatccagtaataacatacttgatgttaataaaagatcctttacacgaaggttggcttgagatttcgcgtaaaaatactaagttgataagaaga |
2156871 |
T |
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| Q |
201 |
atattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggagta |
261 |
Q |
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| T |
2156872 |
atattgcaacctttttggatttgattcgat-gatgtttatcattacacacatgaaggagta |
2156931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 8992 - 8729
Alignment:
| Q |
1 |
ttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaatt |
100 |
Q |
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| T |
8992 |
ttcgtattttggatacccatataaccatcgaagactgttgaagtgactaattccgggaaatttagcagcg-----ttgaggacaaagaaattgttgaagt |
8898 |
T |
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| Q |
101 |
gactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaata---------ctaagttg |
191 |
Q |
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| T |
8897 |
gactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttg |
8798 |
T |
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| Q |
192 |
ataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacatgaaggag |
259 |
Q |
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| T |
8797 |
ataatgagaatattgcaatcttttttggatttgattccatggatgtttatcattatacacataaaggag |
8729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 18179994 - 18179732
Alignment:
| Q |
1 |
ttcgtattttggatatccatatagctattgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaatt |
100 |
Q |
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| T |
18179994 |
ttcgtattttggatacccatataaccatcgaagactgttgaagtgactaattccgggaaatttagcagcg-----ttgaggacaaagaaattgttgaagt |
18179900 |
T |
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| Q |
101 |
gactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaata---------ctaagttg |
191 |
Q |
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| T |
18179899 |
gactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttg |
18179800 |
T |
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| Q |
192 |
ataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggag |
259 |
Q |
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| T |
18179799 |
ataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaaggag |
18179732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 259
Target Start/End: Original strand, 4639202 - 4639387
Alignment:
| Q |
83 |
caaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaat |
182 |
Q |
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| T |
4639202 |
caaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaat |
4639301 |
T |
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| Q |
183 |
a---------ctaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggag |
259 |
Q |
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| T |
4639302 |
actagtcccgctaagttgataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaaggag |
4639387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 46144422 - 46144270
Alignment:
| Q |
29 |
tgaagaccgttgaagtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttg |
128 |
Q |
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||||||| |||||||||| ||||| | | |||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||| |
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| T |
46144422 |
tgaagactgttgaagtgactaattacgggaaatttagcagca-----ttaaggacaaagaaattgttgaagtgactatttatgcagtaataacatacttg |
46144328 |
T |
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| Q |
129 |
atattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta |
186 |
Q |
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| T |
46144327 |
atgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatacta |
46144270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 14962693 - 14962762
Alignment:
| Q |
184 |
ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacat |
252 |
Q |
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| T |
14962693 |
ctaagttgatgatgagaatgttgtaatcttttttggatttgattcgattgatgcttatcattacacacat |
14962762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 14962550 - 14962624
Alignment:
| Q |
76 |
ttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttac |
150 |
Q |
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| T |
14962550 |
ttgaggacaaggaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac |
14962624 |
T |
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