View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_45 (Length: 250)
Name: NF3998_low_45
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23322690 - 23322490
Alignment:
| Q |
1 |
taatttgttgaaagaaaattttggtgagttgggtcttgctagatagccaaggacattgaaaaatgcaaaacccaaagaagtttacaaatgtagttacata |
100 |
Q |
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| T |
23322690 |
taatttgttgaaagaaaattttggtgagttaggtcttgctagatcgccaaggacattgaaaaatgcaaaatccaaagaagtttacaaatgtacttacata |
23322591 |
T |
|
| Q |
101 |
ttaccgggtggggattctctccggtgaacttttcaccggatgcagtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaa |
200 |
Q |
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| T |
23322590 |
ttatcgattggggattctctccagtgaacttttcactggatgcagtctagtgtaaatcttcaccatccaatggctctttaattattttgaccaagtcaaa |
23322491 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| T |
23322490 |
t |
23322490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 52046179 - 52046291
Alignment:
| Q |
116 |
tctctccggtgaacttttcaccggatgcagtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaaaatgtgt |
215 |
Q |
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| T |
52046179 |
tctctccggtgaactgttcactggatgtggtgcggtgtaaatctttatcattcaatagttatttaatgatcttgaccaagtcaagtagaggaaaatgtgt |
52046278 |
T |
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| Q |
216 |
ggctttgattcca |
228 |
Q |
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|||| |||||||| |
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| T |
52046279 |
ggctgtgattcca |
52046291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 1283615 - 1283492
Alignment:
| Q |
116 |
tctctccggtgaacttttc-accggatgcagtccagtgtaaatcttc-accatccaataactctttaattattttgaccaagtcaaatggagaaaaatgt |
213 |
Q |
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| T |
1283615 |
tctctccggtgaacttttttactgaatacagtccattgtaaatctcctaccatccaatggttatttgatgatttttaccaagtcaagtagaggaaaatgt |
1283516 |
T |
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| Q |
214 |
gtggctttgattccaatgcactct |
237 |
Q |
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| T |
1283515 |
gtggttgtgattccactgcactct |
1283492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 3972674 - 3972581
Alignment:
| Q |
145 |
gtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaaaatgtgtggctttgattccaatgcactctc |
238 |
Q |
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| T |
3972674 |
gtccagtgtaaatcttcaccatccaatagctatttaatgatcttgatcaagtcaagtagaggaaaatgtgtggctgtgattccactgaactctc |
3972581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 39934284 - 39934155
Alignment:
| Q |
109 |
tggggattctctccggtgaacttttcaccggatgcagtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaa |
208 |
Q |
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|||||||||||||| |||| |||||| |||| ||||||||||| ||||| |||||| ||| | || ||| |||||||| ||||||| || ||||| |
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| T |
39934284 |
tggggattctctccaatgaatttttcattggatacagtccagtgtcaatctccaccatttaatggtttttcaataattttgactaagtcaattgtagaaa |
39934185 |
T |
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| Q |
209 |
aatgtgtggctttgattccaatgcactctc |
238 |
Q |
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||| || || | | |||||| ||||||||| |
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| T |
39934184 |
aatatggggttattattccactgcactctc |
39934155 |
T |
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