View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_low_47 (Length: 250)
Name: NF3998_low_47
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_47 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 53514984 - 53514746
Alignment:
| Q |
8 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514984 |
aagcataggctaggctcatggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
53514885 |
T |
|
| Q |
108 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53514884 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgagtggagatctttctttttatattttttttaaatgagagagatcttaaa |
53514785 |
T |
|
| Q |
208 |
ctgttggaatctatattgtattatataaaacctccattttgcc |
250 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
53514784 |
ctgttggaatctatattgtat----taaaacctccattttgcc |
53514746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 53511283 - 53511073
Alignment:
| Q |
8 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
53511283 |
aagcataggctagggtcatggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaagaaaatctagtattcatattcatacatg |
53511184 |
T |
|
| Q |
108 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaa |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
53511183 |
gaatattcagattgcaggaaacttgaactttctgaaagactccagagtttgagtggagatcttagtttt------------aaatgagagagatcttaaa |
53511096 |
T |
|
| Q |
208 |
ctgttggaatctatattgtatta |
230 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
53511095 |
ctgttggaatttatattgtatta |
53511073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 53525445 - 53525323
Alignment:
| Q |
8 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || || |||||||| ||||| |||||||| | |||||||||||||||| ||||||||| | |
|
|
| T |
53525445 |
aagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaaaatctag-----gtattcatacatg |
53525352 |
T |
|
| Q |
108 |
aaatattcagattgcaggaaacttaaact |
136 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
53525351 |
gaatattcagattgcagtaaacttgaact |
53525323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 53549053 - 53548992
Alignment:
| Q |
8 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggtt |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
53549053 |
aagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtggtt |
53548992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 20197562 - 20197525
Alignment:
| Q |
8 |
aagcataggctaggctcatggaaaattaaattatatga |
45 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
20197562 |
aagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University