View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_48 (Length: 248)
Name: NF3998_low_48
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41742100 - 41741868
Alignment:
| Q |
1 |
tcaattcgaacatagcagcttcaacataaaatagataaagaaatatgatcaaaacatatataaacatgagaaactgggccatattttttcactcctttgc |
100 |
Q |
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| T |
41742100 |
tcaattcgaacatagcagcttcaacataaaatagataaagaaatatgatcaaaacataaataaacatgagaaactgggccatattttttctctcctttgc |
41742001 |
T |
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| Q |
101 |
aagtactaaagataattttcttttattgttttatacttaaatatgtaatgatctgttaacttcaatttaaatagttttttggctcttaggtgttgcaaga |
200 |
Q |
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| T |
41742000 |
aagtactaaagataattttcttttattgttttatacttaaatatgtaatgatctgttaacttcaatttaaatagttttttggctcttaggtgttgcaaga |
41741901 |
T |
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| Q |
201 |
agccatttataaaatattacttagttttaaatg |
233 |
Q |
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| T |
41741900 |
agccatttataaaatattacttagttttaaatg |
41741868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 9260921 - 9261005
Alignment:
| Q |
129 |
ttttatacttaaatatgtaatgatctgttaacttcaatttaaatagttttttggctcttaggtgttgcaagaagccatttataaaat |
215 |
Q |
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| T |
9260921 |
ttttataagtaaatatttcatgatttgttagcttaaatt-aaatagtttttag-cacttatgtgttgcaagaagccatttataaaat |
9261005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 33851609 - 33851546
Alignment:
| Q |
29 |
aaatagataaagaaatatgatcaaaacatatataaacatgagaaactgggccatattttttcac |
92 |
Q |
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| T |
33851609 |
aaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatattttttcac |
33851546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 23481134 - 23481078
Alignment:
| Q |
37 |
aaagaaatatgatcaaaacatatataaacatgagaaactgggccatattttttcact |
93 |
Q |
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| T |
23481134 |
aaagaaaaatgatcaaaacataagtaaacatgagaatatgagccatattttttcact |
23481078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 29345315 - 29345409
Alignment:
| Q |
20 |
ttcaacataaaatagataaagaaatatgatcaaaacatatataaacatgagaaactgggccatattttttcactcctttgcaagtactaaagataat |
116 |
Q |
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| T |
29345315 |
ttcaacaagaaatagagaaagacatgtgatcaaagcataaacaaacatgagaaaatgagccatagtttttca--cctttgcatgtaatgaagataat |
29345409 |
T |
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