View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3998_low_52 (Length: 242)

Name: NF3998_low_52
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3998_low_52
NF3998_low_52
[»] chr2 (7 HSPs)
chr2 (1-240)||(2327185-2327424)
chr2 (14-240)||(2330900-2331126)
chr2 (1-237)||(2294020-2294256)
chr2 (1-237)||(2321335-2321571)
chr2 (1-237)||(2310351-2310587)
chr2 (1-237)||(2303633-2303869)
chr2 (1-240)||(2351206-2351445)
[»] chr8 (2 HSPs)
chr8 (17-218)||(41127234-41127435)
chr8 (28-144)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (114-161)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (29-150)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2327424 - 2327185
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327424 caaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 2327325  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327324 caaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 2327225  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctctgc 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2327224 ttggatcctcccaaacacgaggatccaaccccatctctgc 2327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 2331126 - 2330900
Alignment:
Q  14 ccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctat 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||      
T  2331126 ccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcc 2331027  T
Q  114 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctccca 213  Q
    |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2331026 cagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctccca 2330927  T
Q  214 aacacgaggatccaaccccatctctgc 240  Q
    ||||||||| |||||||||||||||||    
T  2330926 aacacgagggtccaaccccatctctgc 2330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2294256 - 2294020
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| |||    
T  2294256 caaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccggga 2294157  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2294156 caaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactcca 2294057  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctc 237  Q
      || |||||||||||||||||||||||| |||||||    
T  2294056 acgggtcctcccaaacacgaggatccaacgccatctc 2294020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2321571 - 2321335
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    |||||| |||||||||||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| |||    
T  2321571 caaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccggga 2321472  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    |||||||| ||  |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321471 caaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 2321372  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctc 237  Q
    |||||||||||||||||||||||||| || |||||||    
T  2321371 ttggatcctcccaaacacgaggatcccacgccatctc 2321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2310587 - 2310351
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||    
T  2310587 caaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccggga 2310488  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||||||    
T  2310487 caaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactcca 2310388  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctc 237  Q
     ||| ||||||||||||||| |||||||| |||||||    
T  2310387 atgggtcctcccaaacacgacgatccaacgccatctc 2310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2303869 - 2303633
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    |||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | | |||    
T  2303869 caaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcagga 2303770  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    |||||||| || |||||| |||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  2303769 caaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactcca 2303670  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctc 237  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2303669 ttggatcctcccaaacacgaggatcccaccccatctc 2303633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2351445 - 2351206
Alignment:
Q  1 caaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 100  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||    
T  2351445 caaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccggga 2351346  T
Q  101 caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 200  Q
    || ||||| ||| || | ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||    
T  2351345 cagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactcca 2351246  T
Q  201 ttggatcctcccaaacacgaggatccaaccccatctctgc 240  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  2351245 ttggatcctcccaaacacgaggatcccaccccatctctgc 2351206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 41127435 - 41127234
Alignment:
Q  17 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag 116  Q
    |||||| ||| ||||||||  |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||  ||     
T  41127435 ccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaa 41127336  T
Q  117 ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 216  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  41127335 ctccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaac 41127236  T
Q  217 ac 218  Q
    ||    
T  41127235 ac 41127234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  28 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 127  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  128 atcatcttgatctcttt 144  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  114 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 161  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  29 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 128  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  129 tcatcttgatctctttactccc 150  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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