View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_54 (Length: 239)
Name: NF3998_low_54
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 23323145 - 23322923
Alignment:
| Q |
17 |
agttagcagttttcctagttggttgaaggatttgaaacttcactcaagagcaatactcatattacctaatataagcaatggaatcccttaacaagaaagt |
116 |
Q |
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| T |
23323145 |
agttagcagttttcctagttggttgaaggatttgaaacttcactcaagagcaatactcatattacctaatataagcaatggaatcccttaacaagaaagt |
23323046 |
T |
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| Q |
117 |
tatatgcactcttatggttattttataaactgattgtttctttttctaatttatttgtttggtgatcttgtatcagaataaatctcctcaaatacaactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23323045 |
tatatgcactcttatggttattttataaactgattgtttctttttctaatttatttgtttggtgatcttgtatcagaataaagctcctcaaatacaactt |
23322946 |
T |
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| Q |
217 |
ttttcattacaagcctcaaactc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
23322945 |
ttttcattacaagcctcaaactc |
23322923 |
T |
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