View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_low_55 (Length: 238)
Name: NF3998_low_55
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_55 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 45522864 - 45523084
Alignment:
| Q |
18 |
ttaaattgttccttttctttaccgagatcctctttatcgagatcccctttaccgatatcccctttactgatagcatgaagaagaatgttgtaggtatgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45522864 |
ttaaattgttccttttctttaccgagatcctctttatcgagatcccctttaccgatatcccctttactgatagcatgaagaagaatgttgtaggtatgaa |
45522963 |
T |
|
| Q |
118 |
aatctggagaaaatccatttctatccatctcaccaagcagtgtgaggacctgatccacctttccaagtctgtacttggcataaatgacaatattataagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45522964 |
aatctggagaaaatccatttctatccatctcaccaagcagtgtgaggacctgatccacctttccaagtctgtacttggcataaatgacaatattataagt |
45523063 |
T |
|
| Q |
218 |
taaaatatctgatgaaaaacc |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45523064 |
taaaatatctgatgaaaaacc |
45523084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University