View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_57 (Length: 236)
Name: NF3998_low_57
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48450216 - 48450437
Alignment:
| Q |
1 |
cccaaatcaaggtaagcacaaatttgcatatttaatcaatgagatttcatatatatttccagatttccttttccatgcataaatcaaaagataaacatga |
100 |
Q |
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| T |
48450216 |
cccaaatcaaggtaagcacaaatttgcatatttaatcaatgagatttcatatatatttccagatttccttttgcatgcataaatcaaaagataaacatga |
48450315 |
T |
|
| Q |
101 |
acatacaactctttctttctgaccaatttgcaggctcaggagttgaggagatactatagccttcagtttataacatcttctttagagaagaaagctgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450316 |
acatacaactctttctttctgaccaatttgcaggctcaggagttgaggagatactatagccttcagtttataacatcttctttagagaagaaagctgcag |
48450415 |
T |
|
| Q |
201 |
tggcaaagttaaaagcaaaact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48450416 |
tggcaaagttaaaagcaaaact |
48450437 |
T |
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