View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_58 (Length: 227)
Name: NF3998_low_58
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_58 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 1243688 - 1243468
Alignment:
| Q |
7 |
ctagtgaggtacacgaggggaagtaattgatccaacttataaatgtgaacgagtactttccattaactaccaatcaaaatacaaagactggatattgtta |
106 |
Q |
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| T |
1243688 |
ctagtgaggtacatgaggggaagtaattgatccaacttataaatgtgaacgagtactttccattaactaccaatcaaaatacaaagaccggatattgtta |
1243589 |
T |
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| Q |
107 |
atcgaattgtcaaaattcaatgaaataattcgtatatagaaaactttgaactaataacaacctatgtcgttaaatttacttcaaattttacgaaactcca |
206 |
Q |
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| T |
1243588 |
atcgaattgtcaaaattcaatgaactaattcgtatatagaaaactttgaactaataacaacctatgtcgttaaatttacttcaaattttacgaaactcca |
1243489 |
T |
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| Q |
207 |
ttcattactgctagagcaatt |
227 |
Q |
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| T |
1243488 |
ttcattacttctagagcaatt |
1243468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 42008347 - 42008127
Alignment:
| Q |
7 |
ctagtgaggtacacgaggggaagtaattgatccaacttataaatgtgaacgagtactttccattaactaccaatcaaaatacaaagactggatattgtta |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
42008347 |
ctagtgaggtacatgaggggaagtaattgatccaacttataaatgtgaacgagtactttccattaactaccgatcaaaatacaaagaccggatattgtta |
42008248 |
T |
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| Q |
107 |
atcgaattgtcaaaattcaatgaaataattcgtatatagaaaactttgaactaataacaacctatgtcgttaaatttacttcaaattttacgaaactcca |
206 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42008247 |
atcgaattgtcaaaattcaatgaactaattcgtatatagaaaactttgaactaataacaacctatatcgttaaatttacttcaaattttacgaaactcca |
42008148 |
T |
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| Q |
207 |
ttcattactgctagagcaatt |
227 |
Q |
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||||||||| ||||||||||| |
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| T |
42008147 |
ttcattacttctagagcaatt |
42008127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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