View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_6 (Length: 568)
Name: NF3998_low_6
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 160 - 549
Target Start/End: Original strand, 41698097 - 41698493
Alignment:
| Q |
160 |
ttactattaattatacatacatgcaataacattggtgtctgtttctttctt----gtagaggaaatttacatcaagaagaggcacaccacttccagctgc |
255 |
Q |
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| T |
41698097 |
ttactattaattatacatacatgcaataacattggtgtatgtttctttctttctagtagaggaaatttacatcaagaagaggcacaccacttccagctgc |
41698196 |
T |
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| Q |
256 |
agtccccgagagttcatcccaatacatagggaatttggtttgattattatgaaaaagtgctttgagaagtgattctgattgagg---agtttgagtttga |
352 |
Q |
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| T |
41698197 |
agtccccaagagttcatcccaatacatagggaatttggtttgattattatgaaaaagtgctttgagaagtgattctgattgaggaggagtttgagtttga |
41698296 |
T |
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| Q |
353 |
gcaaagggtctaagctgattttgaagtatggtgtcatcagccactctgttttttatcctttgggagaatctttggcctattaagaaacccatttcgtatg |
452 |
Q |
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| T |
41698297 |
gcaaagggtctaagctgattttgaagtatggtgtcatcagccactctgttttttatcctttgggagaatctttggcctattaagaaacccatttcgtatg |
41698396 |
T |
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| Q |
453 |
aatctttgcatggtccaacttcaaacatctcaagtttttcacgttccattccaaagctctgtggccaagttctacaatgaacacaaattagattatt |
549 |
Q |
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| T |
41698397 |
aatctttgcatggtccaacttcaaacatctcaagtttttcacgttccattccaaagctctgtggccaagttctacaatgaacacaaattagattatt |
41698493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 41697947 - 41698067
Alignment:
| Q |
14 |
tcatcaacaacaagaactgtagaacactcgtttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttccttcttgaaat |
113 |
Q |
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| T |
41697947 |
tcatcaacaacaagaactgtagaacactcatttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttccttcttgaaat |
41698046 |
T |
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| Q |
114 |
taataagtaaaatctgctcac |
134 |
Q |
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| T |
41698047 |
taataagtaaaatctgctcac |
41698067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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