View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3998_low_62 (Length: 216)

Name: NF3998_low_62
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3998_low_62
NF3998_low_62
[»] chr1 (11 HSPs)
chr1 (17-201)||(1842690-1842874)
chr1 (17-201)||(1868299-1868483)
chr1 (107-201)||(9118377-9118471)
chr1 (119-201)||(9161981-9162063)
chr1 (116-201)||(9170807-9170892)
chr1 (116-201)||(9218890-9218975)
chr1 (116-201)||(9200374-9200459)
chr1 (122-201)||(9156069-9156148)
chr1 (103-201)||(1816156-1816254)
chr1 (94-201)||(1856781-1856888)
chr1 (116-201)||(9229775-9229860)
[»] chr7 (1 HSPs)
chr7 (116-177)||(37567745-37567806)
[»] chr3 (1 HSPs)
chr3 (119-201)||(40568360-40568442)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 1842690 - 1842874
Alignment:
Q  17 ggcaaaggtggttttggtactgttttcaaaggaattctagatgataaaagaatcgttgctatcnnnnnnnnnnnnntaatagatagaagccaaatcaatc 116  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||             ||||||||||||||||||||||||    
T  1842690 ggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatc 1842789  T
Q  117 aattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842790 aattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 1842874  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 1868299 - 1868483
Alignment:
Q  17 ggcaaaggtggttttggtactgttttcaaaggaattctagatgataaaagaatcgttgctatcnnnnnnnnnnnnntaatagatagaagccaaatcaatc 116  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||             |||||||||||||||||||| |||    
T  1868299 ggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatc 1868398  T
Q  117 aattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868399 aattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 1868483  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 9118377 - 9118471
Alignment:
Q  107 caaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||| | ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  9118377 caaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagacagaagt 9118471  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 9162063 - 9161981
Alignment:
Q  119 ttcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  9162063 ttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagt 9161981  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 9170892 - 9170807
Alignment:
Q  116 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  9170892 caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagt 9170807  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 9218975 - 9218890
Alignment:
Q  116 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||    
T  9218975 caattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagt 9218890  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 9200459 - 9200374
Alignment:
Q  116 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| | || |||||| |||||||||||||    
T  9200459 caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagt 9200374  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 9156148 - 9156069
Alignment:
Q  122 attaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  9156148 attaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagt 9156069  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 1816254 - 1816156
Alignment:
Q  103 aagccaaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||||||  | ||||||||||| ||||| | |||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||    
T  1816254 aagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagt 1816156  T

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Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 1856781 - 1856888
Alignment:
Q  94 aatagatagaagccaaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagag 193  Q
    |||||| | |||||||||  | ||||||||||||||||| | |||| |||||||||||||||| || ||||| ||||||||||| ||||||||| ||||     
T  1856781 aatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaa 1856880  T
Q  194 acagaagt 201  Q
    ||||||||    
T  1856881 acagaagt 1856888  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 9229860 - 9229775
Alignment:
Q  116 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    |||||||| |||||||| |||||| | || |||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||    
T  9229860 caattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagt 9229775  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 37567745 - 37567806
Alignment:
Q  116 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactctt 177  Q
    ||||||||||||||||| |   || ||||||||||||||||||||||||| |||||||||||    
T  37567745 caattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtcaaactctt 37567806  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 40568360 - 40568442
Alignment:
Q  119 ttcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagt 201  Q
    ||||| ||||| || || ||||| || ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||    
T  40568360 ttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagt 40568442  T

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