View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_low_64 (Length: 203)
Name: NF3998_low_64
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 39225642 - 39225502
Alignment:
| Q |
47 |
tactcatttattagttaggtcgtgcaaaatggacaatgtataattttagttaggtaaaagacaaacttctaagatcaaattgcccgtccttaaatatacc |
146 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39225642 |
tactcatctattagttaggtcatgcaaaatggacaatgtataattttagttaggtaaaagacaaacttctaagatcaaattgcccgtccttaaatatacc |
39225543 |
T |
|
| Q |
147 |
aaaaagctcataagaataagctagcagccttgcatgattcc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39225542 |
aaaaagctcataagaataagctagcagccttgcatgattcc |
39225502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 39218543 - 39218404
Alignment:
| Q |
48 |
actcatttattagttaggtcgtgcaaaatggacaatgtataattttagttaggtaaaagacaaacttctaagatcaaattgcccgtccttaaatatacca |
147 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39218543 |
actcatctattagttaggtcatgcaaaatggacaatgtataattttagttaggtaaaagacaaacttctaagatcaaattgcccgtccttaaatatacca |
39218444 |
T |
|
| Q |
148 |
aaaagctcataagaataagctagcagccttgcatgattcc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39218443 |
aaaagctcataagaataagctagcagccttgcatgattcc |
39218404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 39196967 - 39196832
Alignment:
| Q |
55 |
tattagttaggtcgtgcaaaatggacaatgtataattttagttag---gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaaaa |
151 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | ||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||||||| |
|
|
| T |
39196967 |
tattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaa |
39196868 |
T |
|
| Q |
152 |
gctcataagaataagctagcagccttgcatgattcc |
187 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
39196867 |
gctcataaggaaaagctagcaaccttgcatgattcc |
39196832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University