View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_8 (Length: 518)
Name: NF3998_low_8
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 33138172 - 33137988
Alignment:
| Q |
316 |
tgcattgttatttttcaatgttcttagatatattcactcaatttgctctttctaattcttgatctgaattaatttcgatgttacccaaaaaagctttgca |
415 |
Q |
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| T |
33138172 |
tgcattgttatttttcaatgttcttagatatattcactcaatttgctctttctaattctcgatctgaattaatttcaatgttactcaaaaaagctttgca |
33138073 |
T |
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| Q |
416 |
tgtatatagcgatttgaattttctgtgttgttacaaatccaagtcctttgattgaaatcatttaaaatgattgacgggctaatat |
500 |
Q |
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| T |
33138072 |
cgtatatagcgatttgaattttctgtgttgttacaaatccaggtcctttgattgaaatcatttcaaatgatagatgggctaatat |
33137988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 33138383 - 33138221
Alignment:
| Q |
123 |
ggagggaataatttacatactttcttgaaaatttccattatggcattgtgattgagaa------------cataatttgtgtgtaatataagttttcaat |
210 |
Q |
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| T |
33138383 |
ggagggaataatttacatactttcttgaaaatttccattatggcattgtgattgagaagataattttgaacataatttgtgtgtaatataagttttcaat |
33138284 |
T |
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| Q |
211 |
tttatataaagattttgaacataagtttccaatggtcattttggattaagatgcataactccc |
273 |
Q |
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| T |
33138283 |
tttatataaagattttgaacataagtttccaatggtcattttggattaagatgcataactccc |
33138221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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