View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_low_9 (Length: 504)
Name: NF3998_low_9
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 28641816 - 28641916
Alignment:
| Q |
38 |
ggtgcagaggaagattgtgaaggtgagaaagtagagtcttgagaaaggtttgttaggtttcttgttgaaaattgataagaaagaattagccattgttgga |
137 |
Q |
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| T |
28641816 |
ggtgcagaggaagattgtgaaggtgagaaagtagattcttgagaaaggtttgttaggtttcttgttgaaaattgataagaaagaattagccattgttgga |
28641915 |
T |
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| Q |
138 |
t |
138 |
Q |
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| T |
28641916 |
t |
28641916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 28642071 - 28642164
Alignment:
| Q |
291 |
aggttttgtttggactg-ggggtgtgtcagaatagacggcttgtgttgtactgttaagtgttaactagacaaactgtttattctctttgcagac |
383 |
Q |
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| T |
28642071 |
aggttttgtttggactgaggggtgtgtcagaatagacggcttgtgttgtactgttaagtgttaaatagacaaactgtttattctctttgcagac |
28642164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 28641959 - 28642037
Alignment:
| Q |
181 |
ttacgacgagctatatgaaaccatggacgttacttgtttcatgagagtgacgcggttgtattattatgaacgtatatat |
259 |
Q |
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| T |
28641959 |
ttacgacgagctatatgaaaccatggacgttacttgtttcatgagagtgacgcggttgtattattatgaacgtatatat |
28642037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 28642188 - 28642240
Alignment:
| Q |
438 |
aacaattgtagaatttactttcaattaaaataaggaatatttgtttcaaaact |
490 |
Q |
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| T |
28642188 |
aacaattgtagaatttactttcaattaaaataaggaatatttgtttcaaaact |
28642240 |
T |
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