View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_high_15 (Length: 393)

Name: NF3999_high_15
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_high_15
NF3999_high_15
[»] chr6 (5 HSPs)
chr6 (13-177)||(10180880-10181044)
chr6 (275-377)||(10181511-10181610)
chr6 (160-205)||(10181197-10181242)
chr6 (275-332)||(10185855-10185912)
chr6 (244-277)||(10181281-10181314)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 10180880 - 10181044
Alignment:
Q  13 cagacataaaaaataattagagtaaaagagtgcatacaattgtatagttgatgcaaaaatattaagttaaaatggtaaaaacactctcttcctcctcctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10180880 cagacataaaaaataattagagtaaaagagtgcatacaattgtatagttgatgcaaaaatattaagttaaaatggtaaaaacactctcttcctcctcctt 10180979  T
Q  113 tcttcgtttttcaagtgatgtttgatggtgtttatttatagggtgagaagaaactaagtttcaga 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10180980 tcttcgtttttcaagtgatgtttgatggtgtttatttatagggtgagaagaaattaagtttcaga 10181044  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 10181511 - 10181610
Alignment:
Q  275 attagtgatatgccaattttaattgtttaaatgtttgaatgcaacttcgacctgttatnnnnnnnnnnntgcaattttgaactcttattttaactgaaat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  10181511 attagtgatatgccaattttaattgtttaaatgtttgaatgcaacttcgacctgttat---aaaaaaaatgcaattttgaactcttattttaactgaaat 10181607  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 10181197 - 10181242
Alignment:
Q  160 aagaaactaagtttcagaacctactacacatgtgttatgtttggat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10181197 aagaaactaagtttcagaacctactacacatgtgttatgtttggat 10181242  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 10185855 - 10185912
Alignment:
Q  275 attagtgatatgccaattttaattgtttaaatgtttgaatgcaacttcgacctgttat 332  Q
    ||||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||    
T  10185855 attagtgatattccaattgtaattgtttatatgtttgaatgcaactttgacctgttat 10185912  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 10181281 - 10181314
Alignment:
Q  244 tttggactatgctcaaaatttgttggtgcaaatt 277  Q
    ||||||||||||||||||||||||||||||||||    
T  10181281 tttggactatgctcaaaatttgttggtgcaaatt 10181314  T

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