View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_18 (Length: 344)
Name: NF3999_high_18
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 6019220 - 6019488
Alignment:
| Q |
65 |
gaagctcaatatccggtcctaggactgactaatccggaaaaccaatcc---gtctactggcgggaggttcaattgaagtcagagtaaagctttgtatgga |
161 |
Q |
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| T |
6019220 |
gaagctcaatatccggtcctaggaccgactaatc-ggaaaaccaatccaccgtctactggcgggaggttcaattgaagtcagagtaaagctttgtatgga |
6019318 |
T |
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| Q |
162 |
ctcgccaaacataagaattgtctgcacttggcaggattcaaacctaagatgcagagaagagcacactcttaggtcctaagcctttaacctatgaactcat |
261 |
Q |
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| T |
6019319 |
ctcgccaaacataagaattgtctgcacttggcaggattcaaacctaagatgcagagaagagcacactcttaggtcctaagtctttaacctatgaactcat |
6019418 |
T |
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| Q |
262 |
gcatattacacaaaaacctcttagtgcttgaccaacgctaatgaattatatggagattatttgttttcct |
331 |
Q |
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| T |
6019419 |
gcatattacacaaaaacctcttagtgcttgaccaacgctaatgaattatatggaaattatttgttttcct |
6019488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 6021032 - 6021205
Alignment:
| Q |
74 |
tatccggtcctaggactgactaatccggaaaaccaatccg---tctactggcgggaggttcaattgaagtcagagtaaagctttgtatggactcgccaaa |
170 |
Q |
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| T |
6021032 |
tatccggtcctaagactgactaatccggaaaaccaatccaccatccactagcgggaggttcaattgaagtcagagcaaa-ctctgtatggactggccaaa |
6021130 |
T |
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| Q |
171 |
cataagaattgtctgcacttggcaggattcaaacctaagatgcagagaagagcacactcttaggtcctaagcctt |
245 |
Q |
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| T |
6021131 |
cataggaattgtttgcacttgacgggattcaaacctgaaatgtagagaggagcacacttctaggtcttaagcctt |
6021205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 6021505 - 6021590
Alignment:
| Q |
244 |
tttaacctatgaactcatgcatattacacaaaaacctcttagtgcttgaccaacgctaatgaattatatggagattatttgttttc |
329 |
Q |
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| T |
6021505 |
tttaacctatgaactcaagcatattacacaaaaacctctaagcactagaccaatcctaatgacttttatggagattatttgttttc |
6021590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 13467768 - 13467806
Alignment:
| Q |
111 |
ccgtctactggcgggaggttcaattgaagtcagagtaaa |
149 |
Q |
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| T |
13467768 |
ccgtctactagcgggaggctcaattgaagtcagagtaaa |
13467806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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