View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_19 (Length: 342)
Name: NF3999_high_19
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 23231719 - 23232047
Alignment:
| Q |
7 |
cctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccctagcttgttctgcctggttgtctgtccctgaggtttcaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||| |||| |
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| T |
23231719 |
cctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaa |
23231818 |
T |
|
| Q |
107 |
tgctcaacatcattcgtgatattatgttgtttgaaagcttcaacaaagcttgtgtgaggttcaaactttctttggccttagatttatttgccaatgtttg |
206 |
Q |
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| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
23231819 |
tactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcaaactttctctggccttagatttatttgtcaatgtttg |
23231918 |
T |
|
| Q |
207 |
aatgaattcatggagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctaagctttttaataaatttccaa |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23231919 |
aatgaattcatcgagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctgagctttttaataaatttccaa |
23232018 |
T |
|
| Q |
307 |
tatgaaccataaggggcgaatgcaaaagt |
335 |
Q |
| |
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|| | |||||||| ||||| |||||||| |
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| T |
23232019 |
taagtcccataaggagcgaaagcaaaagt |
23232047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 23224386 - 23224714
Alignment:
| Q |
7 |
cctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccctagcttgttctgcctggttgtctgtccctgaggtttcaa |
106 |
Q |
| |
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|||||||||||||||| |||||||| || |||||||| || || || |||||||| | ||| || ||||| ||||| | || || |||||| | |||| |
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| T |
23224386 |
cctataaaatccgaaatgttaaattccccgaaaatttgggtcacatctcgaaccaacgtcctcgcctgttcagcctgactatccgttcctgagctctcaa |
23224485 |
T |
|
| Q |
107 |
tgctcaacatcattcgtgatattatgttgtttgaaagcttcaacaaagcttgtgtgaggttcaaactttctttggccttagatttatttgccaatgtttg |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| ||||| |
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|
| T |
23224486 |
tgctcaacatcatccgtgatattatgttgttggaaagcttcaacaaagcttgagtgaggttcacgctttcttcaaccttggatttattttccaaagtttg |
23224585 |
T |
|
| Q |
207 |
aatgaattcatggagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctaagctttttaataaatttccaa |
306 |
Q |
| |
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|||||| || | ||||||| | |||||||| |||| |||||| ||||| || ||||| || ||||||||| ||| ||||||||||| || ||||||||| |
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| T |
23224586 |
aatgaactcgttgagttctcgagttcgaattggtaagaattgtccaatagtccggttgcctaagagctcaaaggtactaagctttttgatgaatttccaa |
23224685 |
T |
|
| Q |
307 |
tatgaaccataaggggcgaatgcaaaagt |
335 |
Q |
| |
|
|||| ||||||||||| || |||||||| |
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|
| T |
23224686 |
tatgccccataaggggcaaaagcaaaagt |
23224714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 48592613 - 48592285
Alignment:
| Q |
7 |
cctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccctagcttgttctgcctggttgtctgtccctgaggtttcaa |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||| |||| |
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|
| T |
48592613 |
cctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaa |
48592514 |
T |
|
| Q |
107 |
tgctcaacatcattcgtgatattatgttgtttgaaagcttcaacaaagcttgtgtgaggttcaaactttctttggccttagatttatttgccaatgtttg |
206 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
48592513 |
tactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttg |
48592414 |
T |
|
| Q |
207 |
aatgaattcatggagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctaagctttttaataaatttccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48592413 |
aatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaa |
48592314 |
T |
|
| Q |
307 |
tatgaaccataaggggcgaatgcaaaagt |
335 |
Q |
| |
|
|| | |||||||| ||||| |||||||| |
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|
| T |
48592313 |
taagtcccataaggagcgaaagcaaaagt |
48592285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 48602308 - 48601980
Alignment:
| Q |
7 |
cctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccctagcttgttctgcctggttgtctgtccctgaggtttcaa |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||| |||| |
|
|
| T |
48602308 |
cctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaa |
48602209 |
T |
|
| Q |
107 |
tgctcaacatcattcgtgatattatgttgtttgaaagcttcaacaaagcttgtgtgaggttcaaactttctttggccttagatttatttgccaatgtttg |
206 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
48602208 |
tactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttg |
48602109 |
T |
|
| Q |
207 |
aatgaattcatggagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctaagctttttaataaatttccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48602108 |
aatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaa |
48602009 |
T |
|
| Q |
307 |
tatgaaccataaggggcgaatgcaaaagt |
335 |
Q |
| |
|
|| | |||||||| ||||| |||||||| |
|
|
| T |
48602008 |
taagtcccataaggagcgaaagcaaaagt |
48601980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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