View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_21 (Length: 328)
Name: NF3999_high_21
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 6970721 - 6970454
Alignment:
| Q |
15 |
tcacctttgagtctctttgcttgtgttgatgctttggtgctaaggtaattctctatggaagaataggcttcacttctcatgagtctttcaccagtaaact |
114 |
Q |
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| T |
6970721 |
tcacctttgagtctctttgcttgtgttgatgctttggtgctaaggtaattctctatggaagaataggcttcacttctcatgagtctttcaccagtaaact |
6970622 |
T |
|
| Q |
115 |
catgaaatgtgatttggatgtaagggtagataaaagtaaccaatttttgtgagtatttctcaatttggttcctaagttgatagggaaaaaattgttgaaa |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970621 |
catgaaatgtgatttggatataagggtagataaaagtaaccaatttttgtgagtatttctcaatttggttcctaagttgatagggaaaaaattgttgaaa |
6970522 |
T |
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| Q |
215 |
aatagcccaaataaacatcaaggaagcaattatggatcctatttgagcaaacatgtcaccttgtttca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970521 |
aatagcccaaataaacatcaaggaagcaattatggatcctatttgagcaaacatgtcaccttgtttca |
6970454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 11449470 - 11449217
Alignment:
| Q |
15 |
tcacctttgagtctctttgcttgtgttgatgctttggtgctaaggtaattctctatggaagaataggcttcacttctcatgagtctttcaccagtaaact |
114 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
11449470 |
tcacctttgagtctctttgcttgtgtagatgctttggagctaaggtaattctctatggaagaataagcttcacttctcatgagtctctcaccagtgaact |
11449371 |
T |
|
| Q |
115 |
catgaaatgtgatttggatgtaagggtagataaaagtaaccaatttttgtgagtatttctcaatttggttcctaagttgatagggaaaaaattgttgaaa |
214 |
Q |
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|||||||||||||||| || ||||||||||||||||| |||||| |||| |||||||| |||||| ||||||||||||||| |||||| |||||||||| |
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| T |
11449370 |
catgaaatgtgatttgaatataagggtagataaaagtgaccaatctttgagagtatttatcaattaagttcctaagttgataaggaaaatattgttgaaa |
11449271 |
T |
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| Q |
215 |
aatagcccaaataaacatcaaggaagcaattatggatcctatttgagcaaacat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11449270 |
aatagcccaaataaacatcaaggaagcaattatggatcctatttgagcaaacat |
11449217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 7696285 - 7696179
Alignment:
| Q |
16 |
cacctttgagtctctttgcttgtgttgatgctttggtgctaaggtaattctctatggaagaataggcttcacttctcatgagtctttcaccagtaaactc |
115 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||| |||||| | |||||| ||||| |
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| T |
7696285 |
cacctttgagtctctttgcttgtgtagatgcttcatagctaaggtaattctctatggaagaataaactatacttctcacgagtctcttaccagtgaactc |
7696186 |
T |
|
| Q |
116 |
atgaaat |
122 |
Q |
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||||||| |
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| T |
7696185 |
atgaaat |
7696179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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