View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_24 (Length: 278)
Name: NF3999_high_24
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 36671718 - 36671966
Alignment:
| Q |
15 |
ttatagacataaaattgtcaatccctcatcgaccgccttaaaacccaaaaattattgggagactccaacttaaagatcatcccactcagaccctctacca |
114 |
Q |
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| T |
36671718 |
ttatagacataaaattgtcaatccctcatcgaccgccttaaaacccaaaaattattgagagactccaacttaaagatcatcccactcggaccctctacca |
36671817 |
T |
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| Q |
115 |
catataaataaagaaatcaaggaaggagatcattttgcataaggcccttatggatgtttacgtcccatttgcgacacccatttatcgaaacccacacgtt |
214 |
Q |
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| T |
36671818 |
catataaataaagaaatcaaggaaggagatcattttgcataaggcccttatggatgtttacctcccatttgcgac--------------ccccacacgtt |
36671903 |
T |
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| Q |
215 |
acctgagaaaatgcaagcaaaaattcaaaatcgcaacctatcatcgaagaataatctacccac |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
36671904 |
acctgagaaaatgcaagcaaaaattcaaaatcgcaacctatcatcgaagaaaaacctacccac |
36671966 |
T |
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