View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_28 (Length: 255)
Name: NF3999_high_28
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 34467898 - 34468146
Alignment:
| Q |
11 |
cacagattgaaatagatgttcttgaagatactctaaagaagattcagagtatgtttgagcacattataggcaagactgtctagtttcattttatcnnnnn |
110 |
Q |
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| T |
34467898 |
cacagattgaaatagatattcttgaagatactctaaagaagattcagagtatgtttgagcacattataggcaagactgtctagtttcctattatcttttt |
34467997 |
T |
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| Q |
111 |
nnn--ctttc--agttaagactttaataattgtgttgcagttctgtacgtgatgaacacaaacctttattatgataatatcgcagttaaaatttgataaa |
206 |
Q |
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| T |
34467998 |
tttttctttctcagttaagactttaataattgtgttgcagttctgtgcgtgatgaacacaaacctttattatgataacatcgcagttaaaatttgataaa |
34468097 |
T |
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| Q |
207 |
attaatgttaccattcttctagttaaattcaagcgatgttaattgcatt |
255 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| |||||||| |
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| T |
34468098 |
attaatgttacctttcttctagttaaagtcaagcgatgtttattgcatt |
34468146 |
T |
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