View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_36 (Length: 245)
Name: NF3999_high_36
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6019080 - 6018852
Alignment:
| Q |
1 |
ttttatatgggtaattaacacatacaaatatctaaaatttctacatcaaatannnnnnnnnn-cttttatctccattaattatcataagcatagtttaga |
99 |
Q |
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| T |
6019080 |
ttttatatgggtaaataacacatacaaatatctaaaatttctacatcaaatttttttcttcttcttttatctccattaattatcataagcatagtttaga |
6018981 |
T |
|
| Q |
100 |
ttatacacttcctaattctataactaaaaagggtattatggagttatgataaatttcaacaataacatctaattaattaatcaattgaaacaaaatccga |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6018980 |
ttatacactttctaattctataactaaaaagggtattatggagttatgataaatttcaacaataacatctaattaattaatcaattgaaacaaaatccga |
6018881 |
T |
|
| Q |
200 |
atcaagattcaagagtaataagaatatta |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
6018880 |
atcaagattcaagagtaataagaatatta |
6018852 |
T |
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