View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_40 (Length: 239)
Name: NF3999_high_40
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17269492 - 17269686
Alignment:
| Q |
1 |
tccatggagtcatgcatagtggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaac |
100 |
Q |
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| T |
17269492 |
tccatggagtcatgcatagtggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaac |
17269591 |
T |
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| Q |
101 |
accatttgttattcaaatttgatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatacatttgtctttgattaattttttaaa |
195 |
Q |
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| T |
17269592 |
accatttgttattcaaatttgatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatatatttgtctttgattaattttttaaa |
17269686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 17269712 - 17269759
Alignment:
| Q |
192 |
taaaagtttggtagatatttgcacagttctaaatttaatgtggcctat |
239 |
Q |
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| T |
17269712 |
taaaagtttggtagatatttgcatagttctaaattttatgtggcctat |
17269759 |
T |
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