View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_41 (Length: 239)
Name: NF3999_high_41
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 17269150 - 17268941
Alignment:
| Q |
2 |
tttgttttttctctctatatacgccaaaagaaatttacatcttgttgtgcatgtaggtccataacatccgtatgatggaaatgtttataccaaaatgaag |
101 |
Q |
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| T |
17269150 |
tttgttttttctctctatatacgccaaaagaaatttacatgttgttgtgcatgtaggtccacaacatccgtatgatggaaatgttcataccaaaatgaag |
17269051 |
T |
|
| Q |
102 |
ttgggaatagaagagagatgtaatgtgttgctaccatcaatgaatgagactaaacctcgacacttttttacttgtgattcatgatcaattaagaaaaaca |
201 |
Q |
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| T |
17269050 |
ttgggaatagaagagagatgtaatgtgttgccaccatcaatgaatgagactaaacctctacacttttttacttgtgattcatgatcaattaagaaaaaca |
17268951 |
T |
|
| Q |
202 |
ttacacatgc |
211 |
Q |
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|||||||||| |
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| T |
17268950 |
ttacacatgc |
17268941 |
T |
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