View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_high_43 (Length: 227)

Name: NF3999_high_43
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_high_43
NF3999_high_43
[»] chr1 (12 HSPs)
chr1 (2-204)||(19757636-19757838)
chr1 (19-125)||(26762223-26762326)
chr1 (32-115)||(8326996-8327079)
chr1 (44-147)||(16256408-16256513)
chr1 (18-147)||(27901204-27901335)
chr1 (19-150)||(33323828-33323960)
chr1 (23-90)||(50959512-50959579)
chr1 (19-105)||(18628953-18629038)
chr1 (19-120)||(18650429-18650529)
chr1 (34-90)||(48563248-48563304)
chr1 (44-75)||(2688455-2688486)
chr1 (19-70)||(26925103-26925154)
[»] chr8 (6 HSPs)
chr8 (19-152)||(10659180-10659312)
chr8 (34-122)||(1029736-1029823)
chr8 (19-105)||(41940082-41940167)
chr8 (34-122)||(41566143-41566231)
chr8 (34-97)||(11954596-11954659)
chr8 (18-85)||(14575355-14575421)
[»] chr4 (10 HSPs)
chr4 (18-203)||(44206983-44207170)
chr4 (18-203)||(5383612-5383799)
chr4 (34-106)||(1745413-1745485)
chr4 (19-105)||(41839725-41839811)
chr4 (19-97)||(25100367-25100444)
chr4 (19-120)||(21121609-21121709)
chr4 (46-88)||(38011672-38011714)
chr4 (34-92)||(44136802-44136860)
chr4 (44-92)||(18402893-18402941)
chr4 (76-132)||(25100308-25100364)
[»] chr7 (4 HSPs)
chr7 (19-144)||(20118245-20118367)
chr7 (19-115)||(46611502-46611594)
chr7 (44-92)||(27900347-27900395)
chr7 (44-131)||(10623303-10623390)
[»] chr2 (8 HSPs)
chr2 (19-103)||(8216759-8216842)
chr2 (18-85)||(9848108-9848174)
chr2 (18-75)||(38002029-38002086)
chr2 (34-94)||(12419537-12419597)
chr2 (34-94)||(12431597-12431657)
chr2 (44-75)||(4730708-4730739)
chr2 (34-74)||(5136197-5136237)
chr2 (44-92)||(36254575-36254623)
[»] chr6 (3 HSPs)
chr6 (44-107)||(31304006-31304069)
chr6 (44-121)||(29032661-29032738)
chr6 (44-97)||(3008851-3008904)
[»] chr3 (4 HSPs)
chr3 (18-152)||(23085152-23085284)
chr3 (19-89)||(47005825-47005894)
chr3 (19-105)||(51663940-51664025)
chr3 (44-92)||(35740193-35740241)
[»] chr5 (2 HSPs)
chr5 (19-90)||(12566904-12566974)
chr5 (34-95)||(18274015-18274076)
[»] scaffold0003 (1 HSPs)
scaffold0003 (34-91)||(353236-353293)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 19757838 - 19757636
Alignment:
Q  2 catcaaacattaagtgcctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacga 101  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  19757838 catcaaacataaagtgcctttcgagcaaagcaacgtgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcgggttaaacaa 19757739  T
Q  102 accaaatcctttcgagtttatgaatcacaacaaaccctttcgggtttacgagccatccgctgcaaaaaggtcaagccgaaccctcccaatctaggaacaa 201  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19757738 accaaaccctttcgagtttatgaatcacaacagaccctttcgggtttacgagccatccgctgcaaaaaggtcaagccgaaccctcccaatctaggaacaa 19757639  T
Q  202 cac 204  Q
    |||    
T  19757638 cac 19757636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 26762326 - 26762223
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagt 118  Q
    |||||||||||| ||||||||||| | |||||||| |||  |||| ||||||||||| ||| |||||||||||| |||||||||||| | |||| || ||    
T  26762326 ctttcgagcaaa-caacgcgtaaaaagtcagatcgaggg--gagttcaatacgttagtaaccagaccctttcgggttaaacgaaccagacccttacgggt 26762230  T
Q  119 ttatgaa 125  Q
    |||||||    
T  26762229 ttatgaa 26762223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 8326996 - 8327079
Alignment:
Q  32 caacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcg 115  Q
    ||||||||||| |||||||||| ||||||||| |||||||| || ||| |||||||||||| |||| | | ||| |||||||||    
T  8326996 caacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaaccagaccctttcgggttaatcaacccagatcctttcg 8327079  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 16256513 - 16256408
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagtttatgaat--cacaacaaacccttt 141  Q
    |||||||||| |||||||||||||||||| || ||  |||||||||||| ||||| |||||| | |||| || |||| | |||  ||||||| |||||||    
T  16256513 actcagatcgagggatgagtccaatacgtcagcaaacagaccctttcgggttaaaagaaccagacccttacgggttttttaatcacacaacagacccttt 16256414  T
Q  142 cgggtt 147  Q
    ||||||    
T  16256413 cgggtt 16256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 27901204 - 27901335
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgag 117  Q
    |||| |||||||| |||| |||||  |||| ||||| |||||||||||||||  |||| ||  |||||||||||| ||||| |||||| | |||| |||     
T  27901204 ccttccgagcaaaacaacacgtaagaactctgatcgagggatgagtccaatatattagcaaacagaccctttcgggttaaaagaaccagacccttacgaa 27901303  T
Q  118 tttatgaatc--acaacaaaccctttcgggtt 147  Q
    ||| ||||||  | |||| |||||||||||||    
T  27901304 tttttgaatcatataacagaccctttcgggtt 27901335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 33323960 - 33323828
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacg-aaccaaatcctttcgag 117  Q
    |||| ||||||| ||||||||||  |||||||||| |||||||||||||||||| |  ||| | |||||||||| | ||||| ||||| | | ||||| |    
T  33323960 cttttgagcaaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtcattaaccataccctttcgggtcaaacgaaaccagaccatttcggg 33323861  T
Q  118 tttatgaatcacaacaaaccctttcgggtttac 150  Q
    |||  ||  |||| || ||||||||||||||||    
T  33323860 ttttagagacacatcagaccctttcgggtttac 33323828  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 50959512 - 50959579
Alignment:
Q  23 cgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttc 90  Q
    |||||||  ||||||||||  |||||||||| |||||||||||||||||| || ||| ||||||||||    
T  50959512 cgagcaatacaacgcgtaagaactcagatcgagggatgagtccaatacgtcagtaaccagaccctttc 50959579  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 18628953 - 18629038
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaacca 105  Q
    ||||||| |||| ||||||||||  |||||||| | |||||||||||||||||| || ||| ||||||||||   ||||||||||||    
T  18628953 ctttcgatcaaa-caacgcgtaagaactcagattgagggatgagtccaatacgtcagtaaccagaccctttcaagttaaacgaacca 18629038  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 18650429 - 18650529
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagt 118  Q
    ||||||||||| |||| ||||||  ||| |||||  |||||||||||||||||| || ||| | |||||| ||| |||||||||||| | ||||||| ||    
T  18650429 ctttcgagcaa-gcaatgcgtaagaactaagatcaagggatgagtccaatacgtcagtaaccatacccttccgggttaaacgaaccacaccctttcgggt 18650527  T
Q  119 tt 120  Q
    ||    
T  18650528 tt 18650529  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 48563304 - 48563248
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttc 90  Q
    ||||||||  ||| |||||||||||||||||||||| ||||| ||| ||||||||||    
T  48563304 acgcgtaagaacttagatcgtgggatgagtccaatatgttagtaaccagaccctttc 48563248  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 2688455 - 2688486
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttag 75  Q
    ||||||||||||||||||||||||||||||||    
T  2688455 actcagatcgtgggatgagtccaatacgttag 2688486  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 26925103 - 26925154
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatac 70  Q
    ||||||||| || ||||||||||  |||||||||| ||||||||||||||||    
T  26925103 ctttcgagccaaacaacgcgtaagaactcagatcgagggatgagtccaatac 26925154  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 10659180 - 10659312
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagt 118  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||||||||||| || ||| |||| ||||| | |||||||||||| ||||||||| ||    
T  10659180 ctttcgagcaaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtcagcaaccagactctttcaggttaaacgaaccagatcctttcgggt 10659279  T
Q  119 ttatgaatcacaacaaaccctttcgggtttacga 152  Q
    |  |||| |||| |||||||||||||||||||||    
T  10659280 tattgaa-cacaccaaaccctttcgggtttacga 10659312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 1029736 - 1029823
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagtttat 122  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||  |||||| | |||| || ||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac-agaccctttcgggttaatagaaccagacccttccgggtttat 1029823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 41940082 - 41940167
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaacca 105  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| |  ||| | ||||| |||| ||||||||||||    
T  41940082 ctttcgagcaaa-caacgcgtaaaaactcagatcgagggatgagttcaatacgtcaaaaaccataccctatcgggttaaacgaacca 41940167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 41566231 - 41566143
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagtttat 122  Q
    ||||||||  ||||||||||||||||||||| |||||||||| ||| ||||||||  || ||||  |||||| | ||||||| ||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaaccagacccttatgggttaacagaaccataccctttcgggtttat 41566143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 11954596 - 11954659
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaa 97  Q
    ||||||||  |||||||||  ||||||||||||||||||||  ||| |||||||||||| ||||    
T  11954596 acgcgtaagaactcagatccagggatgagtccaatacgttaataaccagaccctttcgggttaa 11954659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 14575355 - 14575421
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagacc 85  Q
    |||||||||||| |||||||||||| | |||||||| |||||||||| ||||||| || ||| |||||    
T  14575355 cctttcgagcaa-gcaacgcgtaaaaaatcagatcgagggatgagtctaatacgtcagtaaccagacc 14575421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 44206983 - 44207170
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgag 117  Q
    |||||||| |||| ||||||||||  ||||||||||  ||||||||||||||||| |  ||| |||||||||| | |||||| ||||| | |||| ||||    
T  44206983 cctttcgaacaaaacaacgcgtaagaactcagatcgatggatgagtccaatacgtcaacaaccagaccctttctgtttaaacaaaccagacccttccgag 44207082  T
Q  118 tttatgaatcacaacaaaccctttcgggtttacg-agccatccgctgcaaaaaggtca-agccgaaccctcccaatctaggaacaaca 203  Q
    |||  | ||||||||| ||||||||| ||||||| | | |||| || ||||||||||| | ||||||||||||||||||| |||||||    
T  44207083 ttttagtatcacaacagaccctttcgagtttacgaaacaatccacttcaaaaaggtcatatccgaaccctcccaatctagtaacaaca 44207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 5383799 - 5383612
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgag 117  Q
    ||||||||||||| ||||||| ||  ||| | |||| |||||||||||||||||| |   || ||||||||||||||||||||||||| | || | || |    
T  5383799 cctttcgagcaaaacaacgcgcaagaacttaaatcgagggatgagtccaatacgtcaactaccagaccctttcggattaaacgaaccagacccctccggg 5383700  T
Q  118 tttatgaatcacaacaaaccctttcgggtttacg-agccatccgctgcaaaaaggtca-agccgaaccctcccaatctaggaacaaca 203  Q
    |||  ||||||||||| |||| || ||||||||| | | |||| || ||||||||||| | | ||||||||||||||||| |||||||    
T  5383699 ttttagaatcacaacagacccgttagggtttacgaaacaatccacttcaaaaaggtcatatctgaaccctcccaatctagtaacaaca 5383612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 1745485 - 1745413
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaa 106  Q
    ||||||||  |||||||| | ||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  1745485 acgcgtaagaactcagattgagggatgagtccaatacgttagtaaccagaccctttcgggttaaacgaaccaa 1745413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 41839725 - 41839811
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaacca 105  Q
    ||||||||| || |||||| |||  |||||||||| |||||||||||||||||| || ||| |||||||||| | ||||||||||||    
T  41839725 ctttcgagccaaacaacgcataagaactcagatcgagggatgagtccaatacgtcagtaacaagaccctttcaggttaaacgaacca 41839811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 25100444 - 25100367
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaa 97  Q
    ||||||| |||| ||| ||||||| |||||||||| ||||||||| |||||||| || ||| |||||||||||| ||||    
T  25100444 ctttcgaacaaa-caaagcgtaaaaactcagatcgagggatgagttcaatacgtcagcaaccagaccctttcgggttaa 25100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 21121709 - 21121609
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagt 118  Q
    |||||||||||| ||||| ||||| ||||| || | ||||||||| |||||||  || ||| |||||||||||  |||||||||||| | ||||||| ||    
T  21121709 ctttcgagcaaa-caacgtgtaaaaactcaaattgagggatgagttcaatacgccagaaaccagaccctttcgagttaaacgaaccagaccctttcgggt 21121611  T
Q  119 tt 120  Q
    ||    
T  21121610 tt 21121609  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 38011672 - 38011714
Alignment:
Q  46 tcagatcgtgggatgagtccaatacgttaggaactagaccctt 88  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||    
T  38011672 tcagatcgagggatgagtccaatacgttagtaaccagaccctt 38011714  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 44136860 - 44136802
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcgg 92  Q
    ||||||||  |||| ||||| |||||||||||||||||| || ||| ||||||||||||    
T  44136860 acgcgtaagaactcggatcgagggatgagtccaatacgtcagtaaccagaccctttcgg 44136802  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 18402893 - 18402941
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgg 92  Q
    ||||||||||  |||||||| ||||||||||| ||| ||||||||||||    
T  18402893 actcagatcgatggatgagttcaatacgttagtaaccagaccctttcgg 18402941  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 25100364 - 25100308
Alignment:
Q  76 gaactagaccctttcggattaaacgaaccaaatcctttcgagtttatgaatcacaac 132  Q
    |||| ||||||||| || |||||||||||| | ||||||| ||||||||| ||||||    
T  25100364 gaaccagacccttttgggttaaacgaaccagaccctttcgggtttatgaaacacaac 25100308  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 20118245 - 20118367
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagt 118  Q
    |||||||||||| | || |||||  ||||| |||| |||||||||||||||||| || |||   |||||||||| |||||||||||| | ||||||| ||    
T  20118245 ctttcgagcaaacctacacgtaagaactcatatcgagggatgagtccaatacgtcagcaac--caccctttcgggttaaacgaaccagaccctttcgggt 20118342  T
Q  119 ttatgaatcacaacaaaccctttcgg 144  Q
    |  |||| |||| |||||||||||||    
T  20118343 tattgaa-cacaccaaaccctttcgg 20118367  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 46611502 - 46611594
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcg 115  Q
    |||||||||||| ||||||||||  |||||||||| ||||||||||||||||||    ||  |||||||||||| || ||||||||| | |||||||    
T  46611502 ctttcgagcaaa-caacgcgtaagaactcagatcgagggatgagtccaatacgt---caatcagaccctttcgggttgaacgaaccagaccctttcg 46611594  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 27900347 - 27900395
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgg 92  Q
    |||||||||| ||||||||||||||| ||||| ||| ||||||||||||    
T  27900347 actcagatcgagggatgagtccaatatgttagtaaccagaccctttcgg 27900395  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 10623390 - 10623303
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagtttatgaatcacaa 131  Q
    |||||||||| ||||||||||||||||||||| ||| | ||||| |||| ||||  |||||| | | ||||| |||| ||| ||||||    
T  10623390 actcagatcgagggatgagtccaatacgttagtaaccaaaccctatcgggttaatagaaccagaccttttcgggtttttgagtcacaa 10623303  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 8216759 - 8216842
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaac 103  Q
    ||||||| |||| ||||||||||| |||||||||  ||||||||| |||||| | | |||| |||||||||||| ||||||||||    
T  8216759 ctttcgaacaaa-caacgcgtaaaaactcagatcaagggatgagttcaatacatcaagaaccagaccctttcgggttaaacgaac 8216842  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 9848174 - 9848108
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagacc 85  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||||||||||| || ||| |||||    
T  9848174 cctttcgagcaa-gcaacgcgtaagaactcagatcgagggatgagtccaatacgtcagtaaccagacc 9848108  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 38002086 - 38002029
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttag 75  Q
    ||||||||||||  |||| |||||  |||||||||| |||||||||||||||||||||    
T  38002086 cctttcgagcaagacaacacgtaagaactcagatcgagggatgagtccaatacgttag 38002029  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 12419537 - 12419597
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggat 94  Q
    ||||||||  |||||||||  ||||||||||||||||||||| ||| | ||||||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaaccctttcggat 12419597  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 12431597 - 12431657
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggat 94  Q
    ||||||||  |||||||||  ||||||||||||||||||||| ||| | ||||||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaaccctttcggat 12431657  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 4730739 - 4730708
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttag 75  Q
    ||||||||||||||||||||||||||||||||    
T  4730739 actcagatcgtgggatgagtccaatacgttag 4730708  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 5136237 - 5136197
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgtta 74  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  5136237 acgcgtaagaactcagatcgagggatgagtccaatacgtta 5136197  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 36254623 - 36254575
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgg 92  Q
    |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
T  36254623 actcagatcgagggatgagtccaatacgatagaaaccagaacctttcgg 36254575  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 31304069 - 31304006
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaa 107  Q
    |||||||||| ||||||||| |||||||| || ||| |||||||||||| |||| |||||||||    
T  31304069 actcagatcgagggatgagttcaatacgtcagtaaccagaccctttcgggttaatcgaaccaaa 31304006  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 29032738 - 29032661
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgagttta 121  Q
    |||||||||| ||||||||||||||||||||| ||| ||||| ||| || |||||  | ||||  |||||||||||||    
T  29032738 actcagatcgagggatgagtccaatacgttagtaaccagaccattttgggttaaaacatccaagccctttcgagttta 29032661  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 3008851 - 3008904
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaa 97  Q
    ||||||||||  ||||||||| |||||||||| ||| |||||||||||| ||||    
T  3008851 actcagatcgaaggatgagtctaatacgttagtaaccagaccctttcgggttaa 3008904  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 23085152 - 23085284
Alignment:
Q  18 cctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaaccaaatcctttcgag 117  Q
    ||||||||||||| |||  |||||  ||||| |||| || || ||| |||||||| || ||| ||| ||||||| |||||||||| || | ||||||| |    
T  23085152 cctttcgagcaaaacaattcgtaagaactcaaatcgaggaataagttcaatacgtcagtaaccagatcctttcgtattaaacgaatcagaccctttcg-g 23085250  T
Q  118 tttatgaatcacaacaaaccctttcgggtttacga 152  Q
     || |||||| |||| |||||||||||||||||||    
T  23085251 attttgaatc-caacgaaccctttcgggtttacga 23085284  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 47005825 - 47005894
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagacccttt 89  Q
    ||||||||||| |||||||||||  ||| |||||| |||||||||||||||||| || ||| |||||||||    
T  47005825 ctttcgagcaa-gcaacgcgtaagaactaagatcgagggatgagtccaatacgtcagtaaccagacccttt 47005894  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 51663940 - 51664025
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggattaaacgaacca 105  Q
    |||||||||||| ||||||||||| ||| |||||| | |||||||  |||| || || ||| |||||||||||| |||| |||||||    
T  51663940 ctttcgagcaaa-caacgcgtaaaaacttagatcgagcgatgagtttaatatgtcagtaaccagaccctttcgggttaatcgaacca 51664025  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 35740193 - 35740241
Alignment:
Q  44 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgg 92  Q
    |||||||||| |||| |||||||||||||||  | ||||||||||||||    
T  35740193 actcagatcgagggacgagtccaatacgttaatagctagaccctttcgg 35740241  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 12566974 - 12566904
Alignment:
Q  19 ctttcgagcaaagcaacgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttc 90  Q
    ||||||| |||| ||||||||||| |||||||||| ||||||||| |||||||| || ||| || |||||||    
T  12566974 ctttcgaacaaa-caacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaaccaggccctttc 12566904  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 18274076 - 18274015
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcggatt 95  Q
    ||||||||| |||| ||||| | ||||||||||||  ||||| ||| |||||||||||||||    
T  18274076 acgcgtaaaaactctgatcgagtgatgagtccaatgtgttagtaaccagaccctttcggatt 18274015  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 353236 - 353293
Alignment:
Q  34 acgcgtaaagactcagatcgtgggatgagtccaatacgttaggaactagaccctttcg 91  Q
    ||||||||  |||||||||| ||||||||||||||| || || ||| |||||||||||    
T  353236 acgcgtaagaactcagatcgagggatgagtccaatatgtcagtaaccagaccctttcg 353293  T

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