View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3999_high_44 (Length: 212)
Name: NF3999_high_44
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36675292 - 36675230
Alignment:
| Q |
22 |
aataatcttacactggagacaagaacatgcagccggctatgacatttcctgaagtcaagaagg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36675292 |
aataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagg |
36675230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36685374 - 36685312
Alignment:
| Q |
22 |
aataatcttacactggagacaagaacatgcagccggctatgacatttcctgaagtcaagaagg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36685374 |
aataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagg |
36685312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 36675166 - 36675117
Alignment:
| Q |
153 |
atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675166 |
atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
36675117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University