View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_high_48 (Length: 203)

Name: NF3999_high_48
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_high_48
NF3999_high_48
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-185)||(356568-356748)
[»] chr8 (3 HSPs)
chr8 (19-185)||(10250599-10250766)
chr8 (1-147)||(12659554-12659700)
chr8 (19-185)||(15975174-15975338)
[»] chr4 (1 HSPs)
chr4 (1-173)||(10276488-10276652)
[»] chr3 (2 HSPs)
chr3 (19-162)||(16972289-16972431)
chr3 (97-185)||(1461115-1461204)
[»] chr1 (4 HSPs)
chr1 (19-185)||(24275779-24275937)
chr1 (19-69)||(16110875-16110925)
chr1 (47-169)||(24055933-24056055)
chr1 (113-173)||(16110814-16110874)
[»] scaffold0069 (1 HSPs)
scaffold0069 (19-185)||(11101-11266)
[»] scaffold0120 (1 HSPs)
scaffold0120 (19-173)||(2346-2492)
[»] chr6 (1 HSPs)
chr6 (19-173)||(11166278-11166432)
[»] chr7 (1 HSPs)
chr7 (102-185)||(11676468-11676551)
[»] chr2 (2 HSPs)
chr2 (20-67)||(11387458-11387505)
chr2 (113-173)||(11387395-11387455)


Alignment Details
Target: scaffold0002 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 356568 - 356748
Alignment:
Q  5 aacgaaccagacaagctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattc 104  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  356568 aacgagccacacaggctatgcaaatgtcatgataatgaaacaagccacacaggctatgcatatgtcatgccatgatatttatttcaaagaaaatatattc 356667  T
Q  105 tagccacttaggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  356668 tagccacttaggcaaatgcaaaatataatccagccactaaggctaccacacaattaaatcttaaacaaattacatcttttt 356748  T

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Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 10250766 - 10250599
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataatta--tttcaaagaaaatatattctagccacttagg 116  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||| ||||  ||||||| || ||||||||||||||||||||    
T  10250766 gctatgcaaatgtgatgataatgaaacaagccacagaggctatgcatatgctatgccatgatgattaattttcaaa-aatatatattctagccacttagg 10250668  T
Q  117 caaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    ||||  |||| |||||||||| ||||||||| ||| |||||| |||||||||||||||||| |||||||    
T  10250667 caaaatcaaagtataacccagccactaaggcaaccacacaatgaaatcttaaacaaaatacatcttttt 10250599  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 12659554 - 12659700
Alignment:
Q  1 taagaacgaaccagacaagctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatat 100  Q
    ||||||||| ||| ||| ||||||||||| ||||||| ||| ||||||||||||| |||| |||||||||||| |||||||||||||||||| || ||||    
T  12659554 taagaacgagccacacaggctatgcaaatatcatgattatggaacaagccacacatgctatgcatatgccatgtcatgataattatttcaaaaaatatat 12659653  T
Q  101 attctagccacttaggcaaatgcaaaatataacccagtcactaaggc 147  Q
    ||||||||||||||||| ||||||||||||||  ||| |||||||||    
T  12659654 attctagccacttaggcgaatgcaaaatataattcagccactaaggc 12659700  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 15975174 - 15975338
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattctagccacttaggca 118  Q
    |||||||||||||| |||| || |||||||||||||||| || ||| ||| |||| ||||||||||||||| |   |||||||||||||||||||||| |    
T  15975174 gctatgcaaatgtcgtgatgattaaacaagccacacagggtatgcaaatgtcatgtcatgataattatttcca--gaaatatattctagccacttaggaa 15975271  T
Q  119 aatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    ||  |||| || ||||||| ||||||||| ||| ||||| | |||| |||| ||| ||| |||||||    
T  15975272 aaaacaaattagaacccagccactaaggcaaccacacaactgaatcataaaaaaattacatcttttt 15975338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10276652 - 10276488
Alignment:
Q  1 taagaacgaaccagacaagctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatat 100  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||     ||||| ||||||||   | |||    
T  10276652 taagaacgagccacacaggctatgcaaatgtcatgataatgaaacaagccacaaaggctatgcatatgcaatg-----ataatcatttcaaa---attat 10276561  T
Q  101 attctagccacttaggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaa 173  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||    
T  10276560 attctagccactcaggcaaatgcaaaatataacccagccactaaggctaccacacaattaaattctaaacaaa 10276488  T

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Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 16972431 - 16972289
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattctagccacttaggca 118  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||||||| ||| |||||||||||||||||||||| ||    
T  16972431 gctatgcaaatgtcatgataatgaaacaagtcacacagactatgcatatgctatgtcatgataattattt-aaaaaaaatatattctagccacttagaca 16972333  T
Q  119 aatgcaaaatataacccagtcactaaggctaccgcacaattaaa 162  Q
    ||||||| ||| |||||||  |||||||| ||| ||||||||||    
T  16972332 aatgcaatataaaacccagctactaaggcaaccacacaattaaa 16972289  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 1461204 - 1461115
Alignment:
Q  97 atatattctagccacttaggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatc-ttaaacaaaatacttcttttt 185  Q
    ||||||||||||||||||||||||||||||||| ||| ||  ||||||||| ||| ||||||||| || | ||||||| ||| |||||||    
T  1461204 atatattctagccacttaggcaaatgcaaaataaaactcaaccactaaggcaaccacacaattaactcgtaaaacaaattacatcttttt 1461115  T

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Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 24275937 - 24275779
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattctagccacttaggca 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||| ||||||||     ||||||||| |||||||  ||| ||||||| |||||||||||||    
T  24275937 gctatgcaaatgtcatgataatggaacaagccacaaaggctatgcatatgc-----catgataatcatttcaa--aaattatattcaagccacttaggca 24275845  T
Q  119 aatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||| ||| |||||||    
T  24275844 aatgc-aaatataacccagccactaaggctaccacacaattaaatcataaacaaattacatcttttt 24275779  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 16110925 - 16110875
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgc 69  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  16110925 gctatgcaaatgtcatgataatgaaacaagccacacatgctatgcatatgc 16110875  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 24055933 - 24056055
Alignment:
Q  47 agccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattctagccacttaggcaaatgcaaaatataacccagtcactaagg 146  Q
    ||||||| |||||| |||||||||||| |||||| |||| ||   | || ||||||| |||||||||||||||| |||||||| ||| ||| ||| ||||    
T  24055933 agccacaaaggctatgcatatgccatgtcatgatgattaattttcaaaatatatattatagccacttaggcaaaagcaaaatagaacacagccacaaagg 24056032  T
Q  147 ctaccgcacaattaaatcttaaa 169  Q
    | ||| ||||| |||||| ||||    
T  24056033 caaccacacaactaaatcataaa 24056055  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 16110874 - 16110814
Alignment:
Q  113 taggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaa 173  Q
    |||| |||||||||||| ||| ||| ||||||||| ||| ||||||||||||||| |||||    
T  16110874 taggaaaatgcaaaataaaactcagacactaaggcaaccacacaattaaatcttacacaaa 16110814  T

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Target: scaffold0069 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 11266 - 11101
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataatt-atttcaaagaaaatatattctagccacttaggc 117  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||| |||||||  || ||| |||||||||||||||||    
T  11266 gctatgcaaatgtcatgataatgaaacaagccacacagactatgcatatgtcatgtcatgataattaatttcaa--aatatacattctagccacttaggc 11169  T
Q  118 aaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    || |||||| || | ||||  ||||||||  ||| |||||| |||| ||||||||| ||| |||||||    
T  11168 aagtgcaaattaaagcccaaccactaaggaaaccacacaataaaatattaaacaaattacatcttttt 11101  T

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Target: scaffold0120 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 2346 - 2492
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataattatttcaaagaaaatatattctagccacttaggca 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||     ||||| ||| ||||  || |||||||||||||||||| ||    
T  2346 gctatgcaaatgtcatgataatgtaacaagccacaaaggctatgcatatgccatg-----ataatcattccaaa--aattatattctagccacttagaca 2438  T
Q  119 aatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaa 173  Q
    |||||||| |||||||||  ||||||||||||| |||||||||||| ||||||||    
T  2439 aatgcaaa-tataacccacccactaaggctaccacacaattaaatcataaacaaa 2492  T

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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 11166278 - 11166432
Alignment:
Q  19 gctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatatgccatgccatgataatta-tttcaaagaaaatatattctagccacttaggc 117  Q
    |||||||||||||  |||||||||||||||||||| | |||| ||||||||||||||||||| |||| ||||||| ||   |||||||||||||||||||    
T  11166278 gctatgcaaatgttgtgataatgaaacaagccacaaatgctatgcatatgccatgccatgatgattagtttcaaa-aattaatattctagccacttaggc 11166376  T
Q  118 aaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaa 173  Q
    ||| |||||||| ||||||  ||||||||| ||| ||||| |||||| ||||||||    
T  11166377 aaaagcaaaatagaacccaaccactaaggcaaccacacaactaaatcataaacaaa 11166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 11676468 - 11676551
Alignment:
Q  102 ttctagccacttaggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaaatacttcttttt 185  Q
    |||||||||||||||||||| ||||||| ||  ||| ||||||||| ||| ||||||||||||||||| ||| ||| |||||||    
T  11676468 ttctagccacttaggcaaatacaaaataaaattcagccactaaggcaaccacacaattaaatcttaaataaattacatcttttt 11676551  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 11387505 - 11387458
Alignment:
Q  20 ctatgcaaatgtcatgataatgaaacaagccacacaggctacgcatat 67  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||    
T  11387505 ctatgcaaatgtcatgataatgaaacaagccacaaaggatatgcatat 11387458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 11387455 - 11387395
Alignment:
Q  113 taggcaaatgcaaaatataacccagtcactaaggctaccgcacaattaaatcttaaacaaa 173  Q
    |||| ||||||| |||| ||||| | ||||||||| ||| || ||||||||||||||||||    
T  11387455 taggaaaatgcataataaaaccctgccactaaggcaaccacataattaaatcttaaacaaa 11387395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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