View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_high_49 (Length: 201)

Name: NF3999_high_49
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_high_49
NF3999_high_49
[»] chr3 (2 HSPs)
chr3 (26-183)||(34760908-34761065)
chr3 (26-75)||(25447298-25447347)
[»] chr1 (3 HSPs)
chr1 (26-95)||(9572142-9572211)
chr1 (27-71)||(3495693-3495737)
chr1 (26-75)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (56-139)||(25422347-25422431)
chr7 (26-75)||(20526413-20526462)
chr7 (26-75)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (26-96)||(1402963-1403033)
chr6 (26-75)||(2735036-2735085)
[»] chr5 (1 HSPs)
chr5 (26-75)||(26516367-26516416)
[»] chr4 (2 HSPs)
chr4 (29-78)||(28300350-28300399)
chr4 (89-172)||(7367986-7368070)
[»] chr8 (1 HSPs)
chr8 (52-108)||(29592194-29592250)
[»] chr2 (1 HSPs)
chr2 (27-71)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 34760908 - 34761065
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacctt 125  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760908 gataaaataaagttaaactatgtttatataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacctt 34761007  T
Q  126 ctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761008 ctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaa 34761065  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 25447347 - 25447298
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||| ||||| |   ||||||||||||||||||||||||||||    
T  25447347 gataaaataaacttaaattgtttttgtataagctataaactgttttcata 25447298  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 9572211 - 9572142
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttat 95  Q
    ||||||||||||||||| | | |||||||||||||||| | ||||||||| || |||| ||||| |||||    
T  9572211 gataaaataaagttaaattgcttttgtataagctataagccgttttcatatgccatcattgagaacttat 9572142  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 3495737 - 3495693
Alignment:
Q  27 ataaaataaagttaaactacgtttgtataagctataaactgtttt 71  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  3495737 ataaaataaagttaaattacgtttgtataacctataaattgtttt 3495693  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 48830179 - 48830130
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||||| ||||||  ||  ||||||||||||||||||||||||    
T  48830179 gataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 25422347 - 25422431
Alignment:
Q  56 agctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctca 139  Q
    ||||||||| |||||||| |||| ||||  ||||| |||||||||||||||||  ||||||||| | || || ||||||||||||    
T  25422347 agctataaattgttttcacaggctatcatggagagtttataaacatgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 20526413 - 20526462
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||||||||| || ||||||| | ||||||| |||||||||||    
T  20526413 gataaaataaagttaaattatgtttgtacatgctataagctgttttcata 20526462  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 22283847 - 22283798
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||||||    
T  22283847 gataaaataaagttaaattgtttttgtatcagctataaactgttttcata 22283798  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 1402963 - 1403033
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttata 96  Q
    ||||||||||||||||||||  ||  ||||||||||||| |||||||||| || ||||  |||| ||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttata 1403033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 2735036 - 2735085
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||||||||| ||  ||||||||| |||||| |||||||||||    
T  2735036 gataaaataaagttaaattatttttgtataatctataagctgttttcata 2735085  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 26516367 - 26516416
Alignment:
Q  26 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 75  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  26516367 gataaaataaagtcaaactactttcatataagttataaactgttttcata 26516416  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 28300399 - 28300350
Alignment:
Q  29 aaaataaagttaaactacgtttgtataagctataaactgttttcataggc 78  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||    
T  28300399 aaaataaagttaaattgtttttgtataagctataaactattttcataggc 28300350  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 7368070 - 7367986
Alignment:
Q  89 agcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctcacgaatgtttacgacagtatataaactcaaataa 172  Q
    ||||||||||||||||||||  ||||| ||||| || || ||||||||||||| |  ||||| | | ||| ||||||||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataa 7367986  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 29592250 - 29592194
Alignment:
Q  52 tataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataa 108  Q
    |||||||||||| ||||||||||| || ||| | ||||||||||  |||||||||||    
T  29592250 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 29592194  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 44439462 - 44439418
Alignment:
Q  27 ataaaataaagttaaactacgtttgtataagctataaactgtttt 71  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||    
T  44439462 ataaaataaagttaaactgtttttgtataagctataaattgtttt 44439418  T

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