View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_5 (Length: 540)
Name: NF3999_high_5
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 23397510 - 23396990
Alignment:
| Q |
1 |
aacatagtaaatgcaattgacaaaacaatgtttttgtcatttgatggaaatgatagactatagtattgccagtgaagctttaattatatgatatatttct |
100 |
Q |
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| T |
23397510 |
aacatagtaaatgcaattgacaaaacaatgtttttgtcatttgttggaaatgatagactataatattgccagtgaagctttaattatatgatatatttct |
23397411 |
T |
|
| Q |
101 |
atttcccataaatctaatcatgaaattgaacttcaaaaaccataaatgtttaggcacagacaagttgattcagaagggaaatatggtgtaaaaacattag |
200 |
Q |
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| T |
23397410 |
atttcacataa-tctaatcatgaaattgaacttcaaaaaccataaatgtttaggcacagacaagttgattcagaagggaaatatggtgtaaaaacattag |
23397312 |
T |
|
| Q |
201 |
gggttgggatcgtctcccgtaggattttcacttgagcgagtccagtgaaaatcttcacccttcgatttcctcttaatgacttcgactacaaactacaaaa |
300 |
Q |
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| T |
23397311 |
gggttgggatcgtctcccgtaggattttcacttgagcgagtccagtgaaaatcttcacccttcgatttcctcttaatgacttcgactacaaactacaaaa |
23397212 |
T |
|
| Q |
301 |
ataaatgagtagcggatttatgttctaacatacctaacctagcaagccgattcacccaaccaggggctcgttttccggtcaatcgacccgcgatatcatc |
400 |
Q |
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| T |
23397211 |
ataaatgagtagcggatttatgttctaacatacctaacctagcaagccgattcacccaaccaggggctcgttttccggtcaatcgacccgcgatatcatc |
23397112 |
T |
|
| Q |
401 |
cgtgaaatgattgcagttcttggatataaggtgataggtatctccatgatattcactagccatgttctcaataaatgtccgaaactcggaaggatggatg |
500 |
Q |
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| T |
23397111 |
ggtgaaatgattgcagttcttggatataaggtgataggtatctccatgatattcactagccatgttctcaataaatgtccgaaactcggaaggatggatg |
23397012 |
T |
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| Q |
501 |
tttacttggcccatattgacag |
522 |
Q |
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| T |
23397011 |
tttacttggcccatattgacag |
23396990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 481
Target Start/End: Original strand, 46793925 - 46794066
Alignment:
| Q |
340 |
tagcaagccgattcacccaaccaggggctcgttttccggtcaatcgacccgcgatatcatccgtgaaatgattgcagttcttggatataaggtgataggt |
439 |
Q |
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|||||||||||||||||||||| ||| | ||||||| |||||| | | || ||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
46793925 |
tagcaagccgattcacccaacctgggatttgttttccaatcaatctatatgagacatcatccgtaaaatgattgcagttcttagatataagatgataggt |
46794024 |
T |
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| Q |
440 |
atctccatgatattcactagccatgttctcaataaatgtccg |
481 |
Q |
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| T |
46794025 |
gtcaccatgatactctgaagccatgttttcgataaatgtccg |
46794066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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