View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_6 (Length: 540)
Name: NF3999_high_6
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 15 - 539
Target Start/End: Complemental strand, 33140125 - 33139601
Alignment:
| Q |
15 |
agatttgaaacacaatggccacaccatgacatcatcttatatgtaagcttcctttgttttgaggggtgcccatataatctttacctatgaccaattcaat |
114 |
Q |
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| T |
33140125 |
agatttgaaacacaatggccacaccatgacatcatcttatatgtaagcttcctttgttttgaggggtgcccatataatctttacctatgaccaattcaat |
33140026 |
T |
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| Q |
115 |
atttacttttccaaatgaaatctttgaagaccaacatacttctaagatgtcccattctccaaaaacccacgagcactcgtctcaaccaaattaaataaat |
214 |
Q |
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| T |
33140025 |
atttacttttccaaatgaaatctttgaagaccaacatacttctaagatgtcccattctccaaaaacccacgagcactcgtctcaaccaaattaaataaat |
33139926 |
T |
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| Q |
215 |
aacatgttacataatccgatgcataatttagattgcttggtagtaatggtcccccattcccttctcccccaaccaagaaattttttatacattaaacaag |
314 |
Q |
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| T |
33139925 |
aacatgttacataacccgatgcataatttagattgcttggtagtaatggtcccccattcccttctcccccaaccaagaaattttttatacattaaacaag |
33139826 |
T |
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| Q |
315 |
tcatccatataaatagtaattggagcatatatatgaaaaaagtagaaaaagaatcgcatacaatgcaatatactttttcaataaaataaaggaaaggtaa |
414 |
Q |
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| T |
33139825 |
tcatccatataaatagtaattggagcatatatatgaaaaaagtagaaaaagaatcgcatacaatgcaatatactttttcaataaaataaaggaaaggtaa |
33139726 |
T |
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| Q |
415 |
catttcgtggccttcaattcaattagtgactaaatagtaaattcgatcaaatcaattaaaaaccaattgcgattatacacagattatgggacccatttgc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
33139725 |
catttcgtggccttcaattcaattagtgactaaatagtaaattcgatcaaatcaattaaaaaccaattgctattatacacatattatgggacccatttgc |
33139626 |
T |
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| Q |
515 |
aatactggacaatcatgaacctatg |
539 |
Q |
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| T |
33139625 |
aatactggacaatcatgaacctatg |
33139601 |
T |
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