View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_high_9 (Length: 477)
Name: NF3999_high_9
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 34194918 - 34195365
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgcgtgtctcgccaagataccaaacttgtataatttccagttaataagttacttctaattctcatacctggaat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194918 |
atgaatacaaaccagtagcaggatcttgcgtgtctcgccaagataccaaacttgtataatttccagttaataagttacttctaattctcatacctggaat |
34195017 |
T |
|
| Q |
112 |
caaagtatcactaggaagatcaaaactttgccacaaaattttatccgggccgatttcatcttttacaactagatttccagtttccaagagctgcaaactt |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34195018 |
caaagtatcactaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaactagatttccagtttccaagagctgcaaactt |
34195117 |
T |
|
| Q |
212 |
ggttttaatgctgttgttgatgtattagatgaccatatcataacctctttggaatcgacaataacaagagttcctttatctgtaagattcaaaacacctg |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34195118 |
ggttttactgctgttgttgatgtattagatgaccatatcataacctctttggaatcgacaataacaagagttcctttatctgtaagattcaaaactcctg |
34195217 |
T |
|
| Q |
312 |
atgagtttcctaatggaacatctctatttgctatccacacaggagtttttggtgaaatatctttgtaccatataccaaaatattgaatatttgaatctcc |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34195218 |
atgagtttcctaatggaacatctctatttgctatccacacaggagtttttggtgaaatgtctttgtaccatataccaaaatattgaatatttgaatctcc |
34195317 |
T |
|
| Q |
412 |
aaagttgaagaaacctgcttcaaaagtctcatttgtagagattaaagt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34195318 |
aaagttgaagaaacctgcttcaaaagtctcatttgtagagattaaagt |
34195365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 34216658 - 34216232
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgcgtgtctcgccaagataccaaacttgtataatttccagttaataagttacttctaattctcatacctggaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | |||||||||||||| | |||||| ||| ||| |||||| ||||||| ||||||||||| | |
|
|
| T |
34216658 |
atgaatacaaaccagtagcaggatcttgtgtatccctccaagataccaaacctttataatcaccatttactaagtttgttctaatactcatacctgggag |
34216559 |
T |
|
| Q |
112 |
caaagtatcactaggaagatcaaaactttgccacaaaattttatccgggccgatttcatcttttacaactagatttccagtttccaagagctgcaaactt |
211 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
34216558 |
caaagtgtcaccaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaataagatttccactttccaagagctgcaaactt |
34216459 |
T |
|
| Q |
212 |
ggttttaatgctgttgttgatgtattagatgaccatatcataacctctttggaatcgacaataacaagagttcctttatctgtaagattcaaaacacctg |
311 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
34216458 |
ggttttgatgtcgtcgttgatgtattagatgaccatatcgtaacctctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctg |
34216359 |
T |
|
| Q |
312 |
atgagtttcctaatggaacatctctatttgctatccacacaggagtttttggtgaaatatctttgtaccatataccaaaatattgaatatttgaatctcc |
411 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||| |||||||||| |||||||||||| ||||||||| ||| |
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|
| T |
34216358 |
atgagtttcctagtggaacatctcggtttgctatccaaacaagagtctttggtgaaatattcttgtaccatacaccaaaatattggttatttgaatttcc |
34216259 |
T |
|
| Q |
412 |
aaagttgaagaaacctgcttcaaaagt |
438 |
Q |
| |
|
||||||||||||||| ||||||||||| |
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|
| T |
34216258 |
aaagttgaagaaaccagcttcaaaagt |
34216232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 34205233 - 34204807
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgcgtgtctcgccaagataccaaacttgtataatttccagttaataagttacttctaattctcatacctggaat |
111 |
Q |
| |
|
||||||| |||||||||| |||||| || || |||| |||||||||||||| | || || ||| ||| |||||| ||||| ||| |||||||||| | |
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|
| T |
34205233 |
atgaatataaaccagtagaaggatcatgtgtatctctccaagataccaaacctttaatatcaccatttactaagttgcttctgattttcatacctgggag |
34205134 |
T |
|
| Q |
112 |
caaagtatcactaggaagatcaaaactttgccacaaaattttatccgggccgatttcatcttttacaactagatttccagtttccaagagctgcaaactt |
211 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||| |||||| || | |||||||||| |||||||| || ||| | ||||||| ||||| | || |
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|
| T |
34205133 |
taaagtgtcaccaggtttatcaaaactttgccacaaaaatttatcttggttggtttcatctttcacaactaggttaccactatccaagacctgcacagtt |
34205034 |
T |
|
| Q |
212 |
ggttttaatgctgttgttgatgtattagatgaccatatcataacctctttggaatcgacaataacaagagttcctttatctgtaagattcaaaacacctg |
311 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||| || |||||||||| ||||||||||| |||||||||| || | ||| ||||| ||| |
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|
| T |
34205033 |
ggttttgcatctgttgttgaggtattagaggaccatatcatagcccctttggaatcaacaataacaaggtttcctttatcagttacattaaaaactccta |
34204934 |
T |
|
| Q |
312 |
atgagtttcctaatggaacatctctatttgctatccacacaggagtttttggtgaaatatctttgtaccatataccaaaatattgaatatttgaatctcc |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
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|
| T |
34204933 |
atgagtttcctaatggagaatctctatttgctatccacacaacagttattggtgaaatatccttgtaccatacaccaaaatattggttatttgaatctcc |
34204834 |
T |
|
| Q |
412 |
aaagttgaagaaacctgcttcaaaagt |
438 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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|
| T |
34204833 |
taagttgaagaaaccagcttcaaaagt |
34204807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 258 - 455
Target Start/End: Original strand, 25265566 - 25265763
Alignment:
| Q |
258 |
ctttggaatcgacaataacaagagttcctttatctgtaagattcaaaacacctgatgagtttcctaatggaacatctctatttgctatccacacaggagt |
357 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
25265566 |
ctttggaatcaacaataacaagagttcatttatttgtgagattcaaaactcctgatgagtttcctaatggaatgtctctatttgctatccacacaagagt |
25265665 |
T |
|
| Q |
358 |
ttttggtgaaatatctttgtaccatataccaaaatattgaatatttgaatctccaaagttgaagaaacctgcttcaaaagtctcatttgtagagatta |
455 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||| ||| ||||||| |
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|
| T |
25265666 |
ttttggtgaaatgtctttgtaccatataccaaaatattgaatatttgaatcttcaaagttaaagaatcctgcttcaaaagtttcatctgttgagatta |
25265763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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