View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_10 (Length: 463)
Name: NF3999_low_10
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 43673111 - 43672686
Alignment:
| Q |
17 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacattgtttctcatcaaatactatactaa |
116 |
Q |
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| T |
43673111 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacactgtttctcatcaaatactatactaa |
43673012 |
T |
|
| Q |
117 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
216 |
Q |
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| T |
43673011 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
43672912 |
T |
|
| Q |
217 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43672911 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
43672812 |
T |
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| Q |
317 |
caattcatgattatttaattcccctacaatttaactttgcttatttaaaaggagtttataataattattaccaatagtcaattattatttgtcgatccat |
416 |
Q |
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| T |
43672811 |
caattcatgattatttaattcccctacaatttaactttgcttatttaaaaggagtttattata---attaccaatagtcaattattatttgtcgatccat |
43672715 |
T |
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| Q |
417 |
gaaacaataaataatagagtattaggatg |
445 |
Q |
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| T |
43672714 |
gaaacaataaataatagagtattaggatg |
43672686 |
T |
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