View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_low_12 (Length: 449)

Name: NF3999_low_12
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_low_12
NF3999_low_12
[»] chr5 (4 HSPs)
chr5 (20-431)||(29712882-29713289)
chr5 (335-431)||(29695721-29695817)
chr5 (355-427)||(29687640-29687712)
chr5 (380-427)||(42562748-42562795)
[»] chr4 (10 HSPs)
chr4 (367-427)||(48156844-48156904)
chr4 (385-426)||(33134244-33134285)
chr4 (370-427)||(45366638-45366695)
chr4 (368-427)||(48148102-48148161)
chr4 (384-427)||(48735732-48735775)
chr4 (384-427)||(48862859-48862902)
chr4 (386-427)||(48870162-48870203)
chr4 (386-427)||(48885848-48885889)
chr4 (391-431)||(7904657-7904697)
chr4 (367-427)||(45372474-45372534)
[»] chr1 (3 HSPs)
chr1 (371-427)||(24322067-24322123)
chr1 (385-431)||(24309796-24309842)
chr1 (385-427)||(24415456-24415498)
[»] chr8 (1 HSPs)
chr8 (384-427)||(15348480-15348523)
[»] chr3 (2 HSPs)
chr3 (384-427)||(11015942-11015985)
chr3 (384-427)||(11024954-11024997)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 29713289 - 29712882
Alignment:
Q  20 attatgaaccgacaattaatctttcccaaatcagccaatgcatgcctttccttatggaaccatcatgtccccacaacggaaggaagagcaagatacttcc 119  Q
    |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713289 attatgaaccgac----aatctttcccaaatcagccaatgcatgcctttccttatggaaccatcatgtccccacaacggaaggaagagcaagatacttcc 29713194  T
Q  120 ctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaacgaattcatgagcggaagtaggaataaaatataaatggcaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29713193 ctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaaccaattcatgagcggaagtaggaataaaatataaatggcaa 29713094  T
Q  220 atgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacttaaaaatcaaagtgatccgaaacaatattggcaaaggaggaaacgtgtgaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713093 atgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacctaaaaatcaaagtgatccgaaacaatattggcaaaggaggaaacgtgtgaa 29712994  T
Q  320 tggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712993 tggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgt 29712894  T
Q  420 ttgtaagttatg 431  Q
    ||||||||||||    
T  29712893 ttgtaagttatg 29712882  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 29695721 - 29695817
Alignment:
Q  335 agacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatg 431  Q
    ||||||||  ||||||  || |||||||||||||||||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||    
T  29695721 agacagagacatatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatg 29695817  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 29687640 - 29687712
Alignment:
Q  355 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||||||| || |||||||| ||||||||||    
T  29687640 attgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagt 29687712  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 42562795 - 42562748
Alignment:
Q  380 taatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  42562795 taatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagt 42562748  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 48156904 - 48156844
Alignment:
Q  367 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||    
T  48156904 attcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagt 48156844  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 33134285 - 33134244
Alignment:
Q  385 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaag 426  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaag 33134244  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 45366695 - 45366638
Alignment:
Q  370 caaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    ||||||||  ||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  45366695 caaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagt 45366638  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 48148161 - 48148102
Alignment:
Q  368 ttcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| || || |||||||    
T  48148161 ttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagt 48148102  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 48735775 - 48735732
Alignment:
Q  384 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  48735775 gttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagt 48735732  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 48862859 - 48862902
Alignment:
Q  384 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  48862859 gttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagt 48862902  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 48870162 - 48870203
Alignment:
Q  386 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  48870162 taccggtgaattctcttattcgtttcaaatgcgtttgtaagt 48870203  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 48885848 - 48885889
Alignment:
Q  386 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  48885848 taccggtgaattctcttattcgtttcaaatgcgtttgtaagt 48885889  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 7904657 - 7904697
Alignment:
Q  391 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatg 431  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatg 7904697  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 45372534 - 45372474
Alignment:
Q  367 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||| ||  ||| ||| ||||||||||||||||| |||||||| || ||||||||||    
T  45372534 attcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagt 45372474  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 24322067 - 24322123
Alignment:
Q  371 aaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagt 24322123  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 24309796 - 24309842
Alignment:
Q  385 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatg 431  Q
    |||||||| |||||||||||||||||||| | |||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatg 24309842  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 24415456 - 24415498
Alignment:
Q  385 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||| |||||||||||||||||||| |||||| ||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagt 24415498  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 15348480 - 15348523
Alignment:
Q  384 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagt 15348523  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 11015985 - 11015942
Alignment:
Q  384 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagt 11015942  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 11024997 - 11024954
Alignment:
Q  384 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 427  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  11024997 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagt 11024954  T

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